PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0993s0106.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 679aa    MW: 73952.7 Da    PI: 6.8029
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0993s0106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.5e-094044411954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Cagra.0993s0106.1.p 404 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 441
                          554459******************************88 PP
2BELL122.71.5e-39263334172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqe+q+kkakL ++l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi
  Cagra.0993s0106.1.p 263 ERQEIQMKKAKLSNMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 334
                          79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.6E-82183332IPR006563POX domain
PfamPF075267.7E-47189331IPR006563POX domain
PROSITE profilePS5007112.26382445IPR001356Homeobox domain
CDDcd000861.88E-12385445No hitNo description
SMARTSM003892.3E-9385449IPR001356Homeobox domain
SuperFamilySSF466895.56E-17386452IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-29388452IPR009057Homeodomain-like
PfamPF059202.8E-18402441IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQADDD SNNNNNNSNN NNNNNNTNTN  60
NSSFVFLDSH APPPNASQQF VGIPLSGHEA ASITAADNIS VLHGYPPRVQ YSLYGSHQVD  120
PTHQQAACET PRAQQGLSLT LSSQQQQQQQ HHHQQHQPIH VGFGSGPGED IRVGSGSTGS  180
GVTNGIANLV SSKYLKAAQE LLDEVVNADS DDINAKSQLF SSKKGSSGND KAVGESSAGA  240
GGEGSGGGGE AAGKRTVELG TAERQEIQMK KAKLSNMLHE VEQRYRQYHQ QMQMVISSFE  300
QAAGIGSAKS YTSLALKTIS RQFRCLKEAI AGQIKAANKS LGEEDSVSGV GRFEGSRLKF  360
VDHHLRQQRA LQQLGMIQHP SNNAWRPQRG LPERAVSVLR AWLFEHFLHP YPKDSDKHML  420
AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YMEEMKEQGK NMGSMEKTPL DQSNEDSASK  480
STSNQDKSPM ADTYHMNPNH NGDLEGVTGI QGSPKRLRTS EETMMQPINA DFSSNEKLTM  540
KILEERQGIR SDGGYPFMGN FGQYQMDEMS RFDVVSDQEL MAQRYSGNNN GVSLTLGLPH  600
CDSLSSTHHQ GFMQTHHGIP IGRRVKIGET EEYGAAAING GGSATTAHSS AAAAAAYNGM  660
NIQNQKRYVA QLLPDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16391449563Homeobox protein Meis2
3k2a_B1e-16391449563Homeobox protein Meis2
4xrs_A1e-16391448158Homeobox protein Meis1
4xrs_B1e-16391448158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0993s0106.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272720.0AK227272.1 Arabidopsis thaliana mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL11-09-C20.
GenBankAY0721750.0AY072175.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankAY0965480.0AY096548.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankAY0998540.0AY099854.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankBT0084220.0BT008422.1 Arabidopsis thaliana At2g35940 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505121.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLR0HRR20.0R0HRR2_9BRAS; Uncharacterized protein
STRINGCagra.0993s0106.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50082650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.30.0BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]