PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0993s0051.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 261aa MW: 28423.6 Da PI: 8.8207 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.7 | 1.9e-13 | 152 | 177 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G +C+FaHg Cagra.0993s0051.1.p 152 WKTRICNKWEITGYCPFGTNCHFAHG 177 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-11 | 69 | 105 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-5 | 70 | 103 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.028 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.915 | 71 | 99 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-17 | 146 | 181 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-10 | 148 | 182 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.216 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-8 | 151 | 178 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 152 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MSHRRDSRGD AVHVRFTDDT PPENRFPNPG DNSVWATEDE YNRVFAINPD DAELPSKKTR 60 TSSSTGIGKS FFKTKLCFKS RAGTCPLAAS SCHFAHSSEE LRRPPPLPNR QETATEASRN 120 RESFAMSFGP RGYGGAASDG GNVAQTLKPP NWKTRICNKW EITGYCPFGT NCHFAHGASE 180 LHNFGGGLVG GEGKIGTSIT PDINQTGQVD TVANLISPGV PPQRTSSAVM QKPNGVRTQR 240 KWKGPDKISR IYGDWIDEIE * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0993s0051.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294826.1 | 0.0 | zinc finger CCCH domain-containing protein 28 | ||||
Refseq | XP_023639480.1 | 0.0 | zinc finger CCCH domain-containing protein 28 | ||||
Swissprot | Q5PP65 | 1e-132 | C3H28_ARATH; Zinc finger CCCH domain-containing protein 28 | ||||
TrEMBL | R0HDV0 | 0.0 | R0HDV0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0993s0051.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4003 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35430.1 | 1e-120 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0993s0051.1.p |