PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0993s0031.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 426aa MW: 48328.8 Da PI: 6.2976

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0993s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.9e-12	263	309	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r h e+Er+RR+++N+ f Lr ++Pk K++K + L+ ++ YI++L Cagra.0993s0031.1.p 263 RDHVEAERQRRNNLNQLFYALRAVVPKV-----SKMDKESLLRDTITYINEL 309 5699*********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.7E-43	33	199	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	1.96E-15	257	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.02E-11	258	313	No hit	No description
PROSITE profile	PS50888	15.828	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-15	264	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	264	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-13	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MNDQCNNAED STVEGFMNFS DNSEMWPVET AVQKLLQAVL DGTHKGWTYA IYWQPSFDNS 60 GETVLVWGDG FYKGQEDSKR KTKSTPAEQE PWNKVMLELK PEDSDVIVTD IEWFYLKSMS 120 WSFSRRSGIV GHAFSTSTPV WVSGSDQIRR SGIERAKEEG DFGGQTIACI PLANGVLELG 180 STELIPQSSD LINKIQNLFN LNTLHSLSPD RVNVAQSSSS RVISKSRNLE NACSNPTNSS 240 EVPDQKLLKK RVKRSSKSRE KPRDHVEAER QRRNNLNQLF YALRAVVPKV SKMDKESLLR 300 DTITYINELK VKVDKAVSER NEIEIQLEEV KKELAERRVA SSKEPEGMEI EVKVIESYAM 360 IKVKSSKQNH PEARMMKALM DMELEVDHAS VVVVNDLMVQ QATVKMDFKI YTQEQLRIML 420 ISKIN*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MNDQCNNAED STVEGFMNFS DNSEMWPVET AVQKLLQAVL DGTHKGWTYA IYWQPSFDNS  60
GETVLVWGDG FYKGQEDSKR KTKSTPAEQE PWNKVMLELK PEDSDVIVTD IEWFYLKSMS  120
WSFSRRSGIV GHAFSTSTPV WVSGSDQIRR SGIERAKEEG DFGGQTIACI PLANGVLELG  180
STELIPQSSD LINKIQNLFN LNTLHSLSPD RVNVAQSSSS RVISKSRNLE NACSNPTNSS  240
EVPDQKLLKK RVKRSSKSRE KPRDHVEAER QRRNNLNQLF YALRAVVPKV SKMDKESLLR  300
DTITYINELK VKVDKAVSER NEIEIQLEEV KKELAERRVA SSKEPEGMEI EVKVIESYAM  360
IKVKSSKQNH PEARMMKALM DMELEVDHAS VVVVNDLMVQ QATVKMDFKI YTQEQLRIML  420
ISKIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	9e-38	29	202	6	195	Transcription factor MYC3
4rqw_B	9e-38	29	202	6	195	Transcription factor MYC3
4rs9_A	9e-38	29	202	6	195	Transcription factor MYC3
4yz6_A	9e-38	29	202	6	195	Transcription factor MYC3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0993s0031.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294316.2	0.0	transcription factor MYC2
Swissprot	Q9LUK7	1e-109	BH028_ARATH; Transcription factor bHLH28
TrEMBL	R0HCK7	0.0	R0HCK7_9BRAS; Uncharacterized protein
STRING	Cagra.0993s0031.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21760	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	2e-66	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.0993s0031.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]