PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0925s0079.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 683aa    MW: 75231.1 Da    PI: 5.3489
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0925s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.33.3e-13221271252
                          XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                           + kr  r+++NRe+A  sRqRK+ ++eeLe+kvk + +  ++L ++++  
  Cagra.0925s0079.1.p 221 DDQKRNVRLIRNRESAHLSRQRKRHYVEELEDKVKIMHSTISDLNSKMSFF 271
                          678**********************************99999999887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-13220284IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.37222285IPR004827Basic-leucine zipper domain
PfamPF001708.6E-12223282IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.18E-11224282No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-14224283No hitNo description
CDDcd147044.70E-17225275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MAEPPVVELP DTSLTFSSIA IPPLSVDDFC NSTSDRQPLL GNSISDLIEN DGDGDFDFTF  60
ADSVGDLYFP SENESFFTPL DATNRELFRG FTPASGISGE DDADKNDNGV LISTSASCDQ  120
ESPKDSDCSD TTTHSLSSST PQLGNYVSHI LEATNASSSL GSVQMVIDQK LKVEEEATTY  180
KTSIPKRRKE IDEEDTSNES WNNKYRRMDR DGFAGIGGEE DDQKRNVRLI RNRESAHLSR  240
QRKRHYVEEL EDKVKIMHST ISDLNSKMSF FMAENVTLRH QVSSGSNIYR PLQPRPGMYS  300
VPYPCLPYPA YMVRPQGSQV ALLPIPRLKP QQSVAKLKKF KKVASFSVIG ILFCLFLFGA  360
LAPIVNISYK SNYVTDCVYD QSRGRVLDVN GYLDVSVNSN RAHCGRDSDQ EMGRNVSATE  420
NSGPRRNSSE PLVASLFVPR NDKLVKIDGY LIIHSITESE KSMAIETKNE GGKCDESTTN  480
KGDFHALPLP DSTKTDDMSK NIYSKKRKAL SSSGYNDASE DQLKSTTTAN GKVQQWFREG  540
VAGPMFSSGM CTSVFQFDVS TTSGAIIPAS PPIQQSEHTT DTHKGKQNRR ILRGGLPVSD  600
FNLTKEHNSS SNKNLQDTKP SASMIVSVLV DPREGGEGDI DGMMGVTKSL SRVFIVLLVD  660
DVKYVTYSCV LPQPEVPHLM TT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in stress responses. {ECO:0000250|UniProtKB:O22208}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0925s0079.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290448.10.0bZIP transcription factor 49 isoform X1
SwissprotQ9LXX40.0BZP49_ARATH; bZIP transcription factor 49
TrEMBLR0FMV20.0R0FMV2_9BRAS; Uncharacterized protein
STRINGCagra.0925s0079.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16991911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56660.10.0basic region/leucine zipper motif protein 49
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]