PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0922s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 463aa    MW: 48725.4 Da    PI: 7.9176
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0922s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.25.1e-125882327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         ++ C +++rtG C yG+rC+F+H++
  Cagra.0922s0006.1.p 58 EPDCIYYLRTGVCGYGSRCRFNHPR 82
                         689********************96 PP
2zf-CCCH37.15.2e-12104128327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++f+rtGtCk+G++Ck++H++
  Cagra.0922s0006.1.p 104 HPVCQHFMRTGTCKFGASCKYHHPR 128
                          789********************96 PP
3zf-CCCH391.4e-12150174226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++rtG+Ck+G +C+F+H+
  Cagra.0922s0006.1.p 150 GEKECSYYMRTGQCKFGLTCRFNHP 174
                          6789********************9 PP
4zf-CCCH406.5e-13308332226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++f+rtG Ck+G++C+++H+
  Cagra.0922s0006.1.p 308 DQPECQYFMRTGDCKFGSSCRYHHP 332
                          689*********************9 PP
5zf-CCCH32.61.4e-10354379227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          + + C +fa+ G+Ck+G+ CkF H++
  Cagra.0922s0006.1.p 354 GVAQCTHFAQHGICKFGPACKFDHSM 379
                          6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.615583IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-45682IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-95882IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-65983IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-56182IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6102129IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9103128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5106128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089148176IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5148175IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10150174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5151175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4154173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854306334IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6306333IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10308332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6309335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4312332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723352380IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4352379IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8354378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5355380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4358379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MERYGRAGEE GQRSDPSLEW TSHGGGETGV EASMWRLGLS GGGGGGGGGE SYPERADEPD  60
CIYYLRTGVC GYGSRCRFNH PRDRGAVIGS VRGEAGALPE RMGHPVCQHF MRTGTCKFGA  120
SCKYHHPRQG AGGSVAPVSL SYLGFPLRQG EKECSYYMRT GQCKFGLTCR FNHPVPLAVQ  180
GPPQPQQQQP QLQTIYPTLQ SQSVPSSQQY GLLLTRPSLL PGSYLPNPYG PPMVLPPGMV  240
PYPGWNPYQA SLSAMPSPGT QPSIGSSSVY GIAPLSPSAT TYTGPYQSGP YQSGPSSNTS  300
KEFPQRPDQP ECQYFMRTGD CKFGSSCRYH HPVDAVPPKT GNVLSSIGLP LRPGVAQCTH  360
FAQHGICKFG PACKFDHSMS SSLSYSPSAS SLTDMPVAPY PIGSSTLSGS SAPASSSNEP  420
ISEVVTAAVS TSIISGLSRP EPAETSGDSA SVSGSIEAKT SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0922s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297647.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLR0HYC60.0R0HYC6_9BRAS; Uncharacterized protein
STRINGCagra.0922s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]