PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0906s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 307aa    MW: 35217.6 Da    PI: 10.1719
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0906s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-1719110196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk+l ++  +++ +  +p +f++++++k + s +++l+ ++g sW++++  +++++  ++ +kGW +F ++n L   +f++F+++g+++
  Cagra.0906s0005.1.p  19 FFKILRRATLSSETMRGIPLNFIRSISEK-QLSAKMVLKVSWGSSWTIRI--SRNPRFyFMEKKGWDQFLSDNSLGNDEFLTFTHKGNMC 105
                          8999999999999999**********655.6899****************..****99555569***********************999 PP

                          E..EEEE CS
                   B3  90 felvvkv 96 
                          f   v +
  Cagra.0906s0005.1.p 106 F--AVDI 110
                          9..6665 PP
2B334.24.6e-112253021698
                          EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          l +pk f e h+ +k  +++ ++ d++g +sW+v +  + ++ +  +++GW + +k+  L +gD+++F+l++   +e++vkv r
  Cagra.0906s0005.1.p 225 LGIPKLFEELHM-PK-VTTMFKIHDPEGeNSWNVMF--KITGVQSRFSAGWIRLAKDLSLVVGDVCTFTLIK--PTEMLVKVSR 302
                          679999987775.33.34589999*8888*******..566666669**********************987..6777998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-1813113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1714117IPR015300DNA-binding pseudobarrel domain
CDDcd100178.57E-1617111No hitNo description
PROSITE profilePS5086312.84419114IPR003340B3 DNA binding domain
PfamPF023626.7E-1619110IPR003340B3 DNA binding domain
SMARTSM010192.2E-2019114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898210304IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-17210302IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-14211302IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-12211298No hitNo description
SMARTSM010192.7E-13213304IPR003340B3 DNA binding domain
PfamPF023621.1E-7224301IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVKNRAFGEI MDDGDKPGFF KILRRATLSS ETMRGIPLNF IRSISEKQLS AKMVLKVSWG  60
SSWTIRISRN PRFYFMEKKG WDQFLSDNSL GNDEFLTFTH KGNMCFAVDI YQIDGKELLR  120
QRRSATTVAS SSGRNKREQT KNIYKHVKRE EVESWSESSY PGHESAESIG RRKKLSSKTR  180
EAEETEKSKK KKMKVDSVCD DSEDDTMSLV PEFSITIKKS YLIFLGIPKL FEELHMPKVT  240
TMFKIHDPEG ENSWNVMFKI TGVQSRFSAG WIRLAKDLSL VVGDVCTFTL IKPTEMLVKV  300
SRFKTP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171191RKKLSSKTREAEETEKSKKKK
2171193RKKLSSKTREAEETEKSKKKKMK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0906s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290043.10.0B3 domain-containing protein At5g18090
SwissprotQ9FK611e-163Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLR0FLU30.0R0FLU3_9BRAS; Uncharacterized protein
STRINGCagra.0906s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-163B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]