PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0894s0012.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 432aa    MW: 48612.2 Da    PI: 8.2477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0894s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021931123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C k+F++  +L  Hir H
  Cagra.0894s0012.1.p  9 FVCKFCFKVFPSGKSLGGHIRIH 31
                         89*******************99 PP
2zf-C2H211.50.000916784320
                         ETTTTEEESSHHHHHHHH CS
              zf-C2H2  3 CpdCgksFsrksnLkrHi 20
                         C  Cgk F + + L +H+
  Cagra.0894s0012.1.p 67 CRECGKGFVSMEALSVHM 84
                         88***************9 PP
3zf-C2H212.80.00036127148223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C+dC++ F +   L +H+  H
  Cagra.0894s0012.1.p 127 FCKDCDRGFVSFKALSVHMAFH 148
                          6******************988 PP
4zf-C2H211.90.0007381403123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  Cagra.0894s0012.1.p 381 HECPICFRVFKSGQALGGHKRSH 403
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-5634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.89E-7731No hitNo description
SMARTSM003550.058931IPR015880Zinc finger, C2H2-like
PfamPF139124.1E-5929IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.99936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.89E-76087No hitNo description
PROSITE profilePS5015710.1386592IPR007087Zinc finger, C2H2
SMARTSM003550.146587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806687IPR007087Zinc finger, C2H2
PfamPF139120.0136689IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-56792IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.18E-6125148No hitNo description
PROSITE profilePS501579.307126153IPR007087Zinc finger, C2H2
SMARTSM003550.16126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SuperFamilySSF576671.18E-6376403No hitNo description
PROSITE profilePS501579.265381404IPR007087Zinc finger, C2H2
SMARTSM003550.14381403IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-10381403IPR007087Zinc finger, C2H2
PROSITE patternPS000280383403IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEEEKEKKFV CKFCFKVFPS GKSLGGHIRI HSNENFVDSD RYNGFKKKKR LVDQREKQQQ  60
QQQQVCCREC GKGFVSMEAL SVHMACHSEG EKMLMDYQSD TESETSSAPT RKRSRRVIDQ  120
KHKQQHFCKD CDRGFVSFKA LSVHMAFHSE GEKMLMDSQS DTDTYSAPTG KRSKRMMRRS  180
NSESFSSGSL SFASDIDQED GEGAYTLVML SRDFSYKKNC KLVMNSLGES SDNNSGIVET  240
KSSSGEELKT LNVKKQILEI DKVVDDDQLR SAYSNGVSLC DSDGSDSDYF MNGPKESDSD  300
ISVDGSLRNT GFGSGFNNSL NILKNSDERR SKYELSKSKR VLFSYETDSC ANTISKIHRY  360
RDSISPVVKK AGVEKKKSKG HECPICFRVF KSGQALGGHK RSHSFGNQEH NQASEMRNRI  420
DLNVPASDID E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0894s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307570.10.0zinc finger protein ZAT9
TrEMBLR0ISX20.0R0ISX2_9BRAS; Uncharacterized protein
STRINGCagra.0894s0012.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-109C2H2-like zinc finger protein