PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0891s0087.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 288aa MW: 31368.9 Da PI: 6.882 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 141 | 185 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Cagra.0891s0087.1.p 141 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 185 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.409 | 31 | 86 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-7 | 32 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.38E-7 | 35 | 81 | No hit | No description |
SuperFamily | SSF46689 | 7.69E-10 | 35 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.772 | 134 | 190 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.82E-17 | 136 | 189 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-17 | 137 | 189 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 138 | 185 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-13 | 138 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-11 | 141 | 186 | No hit | No description |
Pfam | PF00249 | 4.9E-13 | 141 | 185 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MEVLRPTATS HVSGGWLMED TKSNAGVTPS GEGCTWTAAE NKAFENALAV YDDNTPDRWQ 60 KVAAVIPGKT VSDVIRQYND LEADVSSIEA GLIPVPGYIT SPFTLDWAGG GGGGFKPGHS 120 VCNKRSSAGR SPELERKKGV PWTEEEHKLF LMGLKKYGKG DWRNISRNFV ITRTPTQVAS 180 HAQKYFIRQL SGGKDKRRAS IHDITTVNLE DEASLESNKS SIVVGEQRSR LTPFPWNQTD 240 NNGTHADAFN ITIGNAISSV HPYGQVMLGG YNNADSCYDA QNTMFQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-18 | 31 | 101 | 6 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00568 | DAP | Transfer from AT5G58900 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0891s0087.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118891 | 0.0 | AK118891.1 Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07. | |||
GenBank | AY519533 | 0.0 | AY519533.1 Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds. | |||
GenBank | BT005473 | 0.0 | BT005473.1 Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280910.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-104 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | R0GRH6 | 0.0 | R0GRH6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0891s0087.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1228 | 27 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0891s0087.1.p |
Publications ? help Back to Top | |||
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