PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0891s0057.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 612aa    MW: 66837 Da    PI: 5.3074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0891s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08254274526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C++Gd+C +aHg
  Cagra.0891s0057.1.p 254 PCPEFRK-GSCSRGDTCEYAHG 274
                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127961.7E-953123IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-1356134IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.13257132IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00185787IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.205.5E-1458132IPR020683Ankyrin repeat-containing domain
CDDcd002045.74E-1459132No hitNo description
PROSITE profilePS500889.59192127IPR002110Ankyrin repeat
SMARTSM002480.004992124IPR002110Ankyrin repeat
SMARTSM003564.9E-5249275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4253276IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-6254274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263254276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4282312IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221284308IPR000571Zinc finger, CCCH-type
SMARTSM0035620284307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MGDDELSHLK FSLLLESSAC NDLSGFKSLV EEEGLECIDR SGLWYGRILG SKKMGFEERT  60
PLMIAALFGS KDIVEYIIST GLVDVNRSCG SDGATALHCA VSGLSANSLE VVTLLLKGSA  120
DPDSCDAYGN KPGDIIFPCL SPVFGSRKKV LDRLFKGNDD LTEVNGQEEG EVEVEVSVSV  180
SPPRGSERKE YPVDPTLPDI KNGIYGTDEF RMYAFKIKPC SRAYSHDWTE CPFVHPGENA  240
RRRDPRKYHY SCVPCPEFRK GSCSRGDTCE YAHGIFECWL HPAQYRTRLC KDETNCSRRV  300
CFFAHKPEEL RPLYPSTGSG VPSPRSSFSS CNSSSAFDMG PISPLPLGAS TTPPLSPNGV  360
SSPMGGGKTW MNWPAITPPA LQLPGSRLKS ALNAREIDFS EDIQSLSSPS RWNNNTPMSA  420
ASSPFSGKGM NRLAGGAMSP VNSLTDMFGT EDNTSGLQIR HSLINPQLHP NSLSSSPVGA  480
NSLFSMDSPT VLTSRAAEFA NQRSQSFIER NNGLNHHPTI SSMTTTCLND WGSLDGKLDW  540
SVQGDELQKL RKSTSFRLRA GGMESRLTNE GTGLEEPDVS WVEPLVKEPQ ETRLAPVWME  600
QSYMETEQTV A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0891s0057.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207550.0AB020755.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1.
GenBankAY0541760.0AY054176.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankAY1033140.0AY103314.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280196.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLR0GPL20.0R0GPL2_9BRAS; Uncharacterized protein
STRINGCagra.0891s0057.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein