PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0866s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SAP
Protein Properties Length: 424aa    MW: 47297.4 Da    PI: 6.9334
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0866s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP725.84e-221442236454
                  SAP  36 rqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnf 125
                           +r an+vwpePfle+la+qva+das+s+G l+aa+alanvf+vc+tw+avsrsd+lwq l+r++W+rt+l++dtWr+e+iyrhrtarnf
  Cagra.0866s0001.1.p   4 PRRGANDVWPEPFLESLAVQVAVDASSSSGLLSAAPALANVFRVCTTWQAVSRSDHLWQLLCRQVWARTHLMHDTWRDEFIYRHRTARNF 93 
                          45699************************************************************************************* PP

                  SAP 126 rtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfat 215
                          rtr+++y+tlqfdp+dvde   +d+l+Crcl+lsd ylaaGfadG+vrlf l++rlhv+t++p  rdr+GrfsravsGivis+srl+fat
  Cagra.0866s0001.1.p  94 RTRTHTYFTLQFDPSDVDE---PDSLLCRCLTLSDLYLAAGFADGTVRLFLLNNRLHVRTLRPPLRDRFGRFSRAVSGIVISNSRLTFAT 180
                          ***************9998...689***************************************************************** PP

                  SAP 216 ldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelv 305
                          +dGdihva+idg  ++++r+a++Gd+vndGalvdfaG+grWwvGl+aGvpGrafhiWd+++ee++fvGGsltdPeavmGWh+ltelt+++
  Cagra.0866s0001.1.p 181 MDGDIHVAEIDG--VGHTRTAYAGDIVNDGALVDFAGCGRWWVGLFAGVPGRAFHIWDCNSEETTFVGGSLTDPEAVMGWHTLTELTTSL 268
                          ************..66************************************************************************** PP

                  SAP 306 GrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCv 393
                          Gr+r++++etavaCt++r +v+dlrnqgv+++e+ee+ rGl v+++da++++yv++dsrG+a+vrrv++ e+vc+frv+g aqr+v+gCv
  Cagra.0866s0001.1.p 269 GRIRISGNETAVACTRWRTMVIDLRNQGVIIGEDEEQrRGLTVTGFDANEQVYVRMDSRGNANVRRVNTQETVCEFRVSGaAQRRVMGCV 358
                          *******************************99888779*****************************************9********* PP

                  SAP 394 nggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsss....dgtihlldfga 454
                          n+  al++aggv+rvWe+e+ e ylys+rervgev+a+vad+rhvav+ss    +++ihl+dfga
  Cagra.0866s0001.1.p 359 NRLNALMCAGGVMRVWEVERGE-YLYSVRERVGEVEAIVADERHVAVASSsstaQSVIHLWDFGA 422
                          ********************77.************************9986777899*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.504.7E-740106No hitNo description
SuperFamilySSF813834.91E-74091IPR001810F-box domain
SuperFamilySSF509783.91E-10115293IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.3E-9116203IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.103.3E-9326420IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.91E-10337419IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
PSRPRRGAND VWPEPFLESL AVQVAVDASS SSGLLSAAPA LANVFRVCTT WQAVSRSDHL  60
WQLLCRQVWA RTHLMHDTWR DEFIYRHRTA RNFRTRTHTY FTLQFDPSDV DEPDSLLCRC  120
LTLSDLYLAA GFADGTVRLF LLNNRLHVRT LRPPLRDRFG RFSRAVSGIV ISNSRLTFAT  180
MDGDIHVAEI DGVGHTRTAY AGDIVNDGAL VDFAGCGRWW VGLFAGVPGR AFHIWDCNSE  240
ETTFVGGSLT DPEAVMGWHT LTELTTSLGR IRISGNETAV ACTRWRTMVI DLRNQGVIIG  300
EDEEQRRGLT VTGFDANEQV YVRMDSRGNA NVRRVNTQET VCEFRVSGAA QRRVMGCVNR  360
LNALMCAGGV MRVWEVERGE YLYSVRERVG EVEAIVADER HVAVASSSST AQSVIHLWDF  420
GAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0866s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2231250.0AJ223125.1 Arabidopsis thaliana mRNA for sterile apetala.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285619.20.0transcriptional regulator STERILE APETALA
SwissprotQ9FKH10.0SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A1I9XFY40.0A0A1I9XFY4_9BRAS; Uncharacterized protein
STRINGCagra.0866s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.10.0SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]