PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0824s0121.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 290aa    MW: 31966.7 Da    PI: 9.4318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0824s0121.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.9e-13556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT+eE+e l+ +v ++G+g Wk I r         +R+  ++k++w+++
  Cagra.0824s0121.1.p  5 KLKWTAEEEEALLAGVGKHGPGKWKNILRDPEfadqlSNRSNIDLKDKWRNL 56
                         689**********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.578162IPR017930Myb domain
SuperFamilySSF466891.0E-15359IPR009057Homeodomain-like
SMARTSM007179.1E-8459IPR001005SANT/Myb domain
PfamPF002491.2E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-14556IPR009057Homeodomain-like
CDDcd116601.32E-20756No hitNo description
SMARTSM005264.3E-18122188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.67E-14123201IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-10123193IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.331124193IPR005818Linker histone H1/H5, domain H15
PfamPF005382.1E-8126186IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGNQKLKWTA EEEEALLAGV GKHGPGKWKN ILRDPEFADQ LSNRSNIDLK DKWRNLSVAP  60
GIQGSKDKIR TPKIKAAAFH LATAAAAATL PPTVLPSPIV TLIRSVSSDL SIDESCNIVV  120
DAKNAPRYDG MIFEALSTLT DVNGSDVSAI FNFIEQQRHE VPLNFRRILS SRLRRLAAQG  180
KLEKTQNFYK MNDNSLVPRT PLVARPKETN VKPRQTNSQG PSVSQEMVGE ASITAAYKLV  240
EVENKLDVVK GSSEEIQRMV NLAKHAENML AIAREMHEEC CQGKIMLLN*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0824s0121.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1185330.0AK118533.1 Arabidopsis thaliana At1g17520 mRNA for putative myb-related DNA-binding protein, complete cds, clone: RAFL19-76-F04.
GenBankAY5195380.0AY519538.1 Arabidopsis thaliana MYB transcription factor (At1g17520) mRNA, complete cds.
GenBankBT0052900.0BT005290.1 Arabidopsis thaliana At1g17520 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304060.10.0telomere repeat-binding factor 4 isoform X3
SwissprotF4I7L11e-148TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLR0IJ620.0R0IJ62_9BRAS; Uncharacterized protein
STRINGCagra.0824s0121.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-140MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]