PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0802s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GeBP | ||||||||
Protein Properties | Length: 245aa MW: 28339.4 Da PI: 9.8797 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 54.5 | 3.4e-17 | 42 | 125 | 7 | 93 |
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 w+e+ +i++LqGl+df++ ++k+++dd+ + yef+k+ i f+ ++++veK+ +LK+K +++k +e s s+ dqk +l Cagra.0802s0008.1.p 42 WNEKAQISMLQGLMDFEDVKKKNAFDDMLETYEFLKDYIVFESYSQEFVEKMMSLKEKLMYHKRK---REERSSSERYDQKGSKLMT 125 ************************************************************99999...7788889999999888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.5E-9 | 41 | 123 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGKVNTNESK EKSKGTLLVN KDVNAKRSNK VGKKVCSETL KWNEKAQISM LQGLMDFEDV 60 KKKNAFDDML ETYEFLKDYI VFESYSQEFV EKMMSLKEKL MYHKRKREER SSSERYDQKG 120 SKLMTLVRED DVEHVVEKPK KSKGIAKPKE EKQEAVMIRE REKWFEDASL VREIVSRGGV 180 DEDTLKSKWD AVPVEKKSQM DQKWSVLRAK ENESLSQKSK FLKELVSIFR GASSSSSSSS 240 SLFM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0802s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299987.1 | 1e-157 | probable transcription factor At4g00232 | ||||
TrEMBL | R0I4G6 | 1e-155 | R0I4G6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0802s0008.1.p | 1e-174 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16691 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01370.1 | 6e-18 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0802s0008.1.p |