PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0701s0033.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 340aa    MW: 37313.3 Da    PI: 5.2315
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0701s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.5e-18229263135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Cagra.0701s0033.1.p 229 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 263
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-781317IPR016679Transcription factor, GATA, plant
SMARTSM004018.7E-18223273IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.635223259IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-16225287No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14227261IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.09E-14228275No hitNo description
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15229263IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEDEAHEFFH AADHFAVDDL LVDFSNDDDD EENDVLADST TTTTTTTALT DSSSVSALDL  60
PNFSGDVHDG TSFSGDLCVP CDDLADELAW LSNIVDESFS PEDVQKLQLI SGFKTRPEPK  120
SESCSLDNPN STSPIFTTDV SVPAKARSKR SRAGTCNWAS RGLLTETVYD NLLTGETIFS  180
SHNLSPPTSP PPPPPMAQIA KKQAIGDGGY RRKKDVSSPE SCGAEERRCL HCATDKTPQW  240
RTGPMGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTKH SNSHRKVMEL RRQKEMSKAH  300
HEFIHHHHGT DTAMILDVSS ESDDYLIHHK VGPDFRQLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0701s0033.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288129.10.0GATA transcription factor 12
SwissprotP697810.0GAT12_ARATH; GATA transcription factor 12
TrEMBLR0FFM60.0R0FFM6_9BRAS; GATA transcription factor
STRINGCagra.0701s0033.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-158GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]