PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0690s0016.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 301aa    MW: 34667 Da    PI: 6.0322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0690s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018121142223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C  Cgk F + ++L  H+r+H
  Cagra.0690s0016.1.p 121 RCCLCGKEFQTMHSLFGHMRRH 142
                          7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.54E-55175No hitNo description
PROSITE profilePS501579.2245380IPR007087Zinc finger, C2H2
SMARTSM003551.25375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
PfamPF139120.00575575IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-5115142No hitNo description
SMARTSM003550.091120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806120142IPR007087Zinc finger, C2H2
PfamPF139123.8E-4121144IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MKRTRDAYEE DESFSSESEE FHQRKIPLKV KFEEERSEDE DDESPQQLPL RKHFCVICKK  60
QFSSGKAYGG HVRIHSTEYN NKGKMKKKLK MKKKKRKIGL VKKDEEKEID LITPDMEGKI  120
RCCLCGKEFQ TMHSLFGHMR RHPDRSWKGV RPPPPQKKFN LSYLGDDDEE DDDGGDDVDE  180
DSSDVRSRST MMSDVTQDVQ EAACILMMIS YTSSNCWDGI KKDMDSPKSE VRSSSCYKGK  240
DKVLGDGGMD DDKKGLIVDM KIEMEIEVKV NNPLDDPKRS LGFDLNQPPH HEDHPYSSWN  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896LKMKKKKRK
29196KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0690s0016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545800.0AC254580.1 Capsella rubella clone JGIBSIA-5G22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299197.11e-161uncharacterized protein LOC17893501
TrEMBLR0I2G71e-160R0I2G7_9BRAS; Uncharacterized protein
STRINGCagra.0690s0016.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-97C2H2 family protein