PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0686s0016.3.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 655aa    MW: 72953 Da    PI: 6.1007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0686s0016.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding444.9e-141366148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                         ++ W+t E++ll++av+++G+++W+++a +++       ++++ +c++++++++
  Cagra.0686s0016.3.p 13 KQTWSTMEELLLACAVHRHGTDSWDSVADEIQkqnstfRTLSPFECRHKYHDLK 66
                         789***********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-6767IPR009057Homeodomain-like
PROSITE profilePS500907.05866IPR017877Myb-like domain
SuperFamilySSF466891.27E-61268IPR009057Homeodomain-like
SMARTSM007174.1E-91268IPR001005SANT/Myb domain
PfamPF002496.8E-141366IPR001005SANT/Myb domain
CDDcd001671.04E-61566No hitNo description
SMARTSM002977.4E-19283392IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.9E-15285409IPR001487Bromodomain
SuperFamilySSF473705.49E-19291403IPR001487Bromodomain
CDDcd043699.55E-18294387No hitNo description
PfamPF004391.1E-12300377IPR001487Bromodomain
PROSITE profilePS5001413.893302373IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MAKPENDKSS PEKQTWSTME ELLLACAVHR HGTDSWDSVA DEIQKQNSTF RTLSPFECRH  60
KYHDLKRRFS RELVSPGSTE GEETVAPEIS SVPWLEELRK LRVDELRREL ERYDLSISSL  120
QLKVKRLEDE REESLKIEDS DLIKIAETKE NQHESGNYSD VPVDDPDPKD INTGTGAENT  180
NIDVKIAEPV DEEPNRIGGE DNDEKPVRED SGRGSCESAA NSDREDTDTG REGNDSPDFV  240
ESMDESKGEE EAKETSDVQS SASLPRKETL EPNQPDNEDQ SLTVNKNLDE SQPLIDFIEV  300
VKSHPIGSYF SRRLESQETP EYDRIIRQHI DFEIIRSRVE EGYYKTSRTT FFRDLLLLIN  360
NARVFYGEPS SEFDAAKQLY QLLKKQMTLK LPKQTLPPPK EESFVMSKEE VTVPSLKPTA  420
LSVPMIACRK RSSLAVKSSV SVTEPSKKKT KVASTADEKQ VSEEEEDETS DKDEEPIVSK  480
KMTRGRTPST AKKVGSRNVK TSLNAGLPSK VRSSNDSSEP KKIVQEKKGN NPSGGSKKQS  540
AASFLKRMKG VSSAETVVET VKADSSNGKR GAEQRKSNSK NEKVDAAKLS AGQKRLTGKK  600
PTTEKGSPAK KNTGVASKRG TGTAMSSPLM AKRNSETSEK ETGSSTRPKK RSRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0686s0016.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329770.0AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637842.10.0uncharacterized protein LOC17884789 isoform X2
TrEMBLF4J4L90.0F4J4L9_ARATH; DNA-binding bromodomain-containing protein
STRINGCagra.0686s0016.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.10.0DNA-binding bromodomain-containing protein