PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0686s0016.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 657aa    MW: 73194.3 Da    PI: 6.1007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0686s0016.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445e-141366148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                         ++ W+t E++ll++av+++G+++W+++a +++       ++++ +c++++++++
  Cagra.0686s0016.2.p 13 KQTWSTMEELLLACAVHRHGTDSWDSVADEIQkqnstfRTLSPFECRHKYHDLK 66
                         789***********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-6767IPR009057Homeodomain-like
PROSITE profilePS500907.05866IPR017877Myb-like domain
SMARTSM007174.1E-91268IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-61268IPR009057Homeodomain-like
PfamPF002496.9E-141366IPR001005SANT/Myb domain
CDDcd001671.03E-61566No hitNo description
SMARTSM002972.1E-16283394IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.0E-14286411IPR001487Bromodomain
SuperFamilySSF473707.2E-18291405IPR001487Bromodomain
CDDcd043693.21E-16294389No hitNo description
PfamPF004399.3E-12300379IPR001487Bromodomain
PROSITE profilePS5001413.603302375IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAKPENDKSS PEKQTWSTME ELLLACAVHR HGTDSWDSVA DEIQKQNSTF RTLSPFECRH  60
KYHDLKRRFS RELVSPGSTE GEETVAPEIS SVPWLEELRK LRVDELRREL ERYDLSISSL  120
QLKVKRLEDE REESLKIEDS DLIKIAETKE NQHESGNYSD VPVDDPDPKD INTGTGAENT  180
NIDVKIAEPV DEEPNRIGGE DNDEKPVRED SGRGSCESAA NSDREDTDTG REGNDSPDFV  240
ESMDESKGEE EAKETSDVQS SASLPRKETL EPNQPDNEDQ SLTVNKNLDE SQPLIDFIEV  300
VKSHPIGSYF SRRLESQLQE TPEYDRIIRQ HIDFEIIRSR VEEGYYKTSR TTFFRDLLLL  360
INNARVFYGE PSSEFDAAKQ LYQLLKKQMT LKLPKQTLPP PKEESFVMSK EEVTVPSLKP  420
TALSVPMIAC RKRSSLAVKS SVSVTEPSKK KTKVASTADE KQVSEEEEDE TSDKDEEPIV  480
SKKMTRGRTP STAKKVGSRN VKTSLNAGLP SKVRSSNDSS EPKKIVQEKK GNNPSGGSKK  540
QSAASFLKRM KGVSSAETVV ETVKADSSNG KRGAEQRKSN SKNEKVDAAK LSAGQKRLTG  600
KKPTTEKGSP AKKNTGVASK RGTGTAMSSP LMAKRNSETS EKETGSSTRP KKRSRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0686s0016.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329770.0AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637841.10.0uncharacterized protein LOC17884789 isoform X1
TrEMBLA0A1I9LTJ30.0A0A1I9LTJ3_ARATH; DNA-binding bromodomain-containing protein
STRINGCagra.0686s0016.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.10.0DNA-binding bromodomain-containing protein