PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0664s0084.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 395aa    MW: 44088.9 Da    PI: 6.3321
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0664s0084.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.46.7e-103454526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         +C f++r G+C+yG+rC++ H+
  Cagra.0664s0084.1.p 34 ICTFYQR-GICSYGSRCRYDHV 54
                         7**9999.*************7 PP
2zf-CCCH19.61.6e-06132154326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C+ +a+ G C++Gd C+ +Hg
  Cagra.0664s0084.1.p 132 QPICS-YAAAGDCPRGDECPHIHG 154
                          68999.*************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-4127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8492956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-43155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-43453IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-73454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549129156IPR000571Zinc finger, CCCH-type
SMARTSM003560.019130155IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.94E-13186262No hitNo description
Gene3DG3DSA:3.30.40.101.0E-9191257IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001629.70E-4197257No hitNo description
SMARTSM001845.5E-7198255IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.342198256IPR001841Zinc finger, RING-type
PfamPF000974.6E-7198255IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180222231IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.16285313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197285314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGEH CEFSHDWKDP TNNICTFYQR GICSYGSRCR YDHVKASRPH  60
LSASSSSSRS APASASASSP LASASLPGVS DRDLSLVPSP CLKPTWNLDS LHQDSVEEVS  120
TFNPGTVKPE EQPICSYAAA GDCPRGDECP HIHGNICPTC GKCCLHPFRP EEREEHKKVC  180
EKKQMQLEAL KLSQEIECCV CLERVLSKPT PAERKFGLLT ECDHAFCIAC IRNWRSSSPS  240
TGMDVNSTLR ACPICRKLSY FVVPSVIWFS APEEKKEIMD NYREKLRSID CKHFNFGDGN  300
CPFGTSCFYK HTVKPGSYAW KYHRPPPRRP CPSGSNFSDV DTLVNMIGNI ISEGEYGPIG  360
FEDTDDDELT TTDMMMLLMH MDIESEDSSN EDIY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0664s0084.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9035760.0GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293077.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLR0HL670.0R0HL67_9BRAS; Uncharacterized protein
STRINGCagra.0664s0084.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-143C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]