PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0568s0165.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 258aa    MW: 29311.4 Da    PI: 8.1535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0568s0165.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-1270122155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +r++h+ +Er+RR++  + +  Lr +lP+      ++K s ++ +e+A +YIk+Lq
  Cagra.0568s0165.1.p  70 KRAKHKDIERQRRQEATTLYKSLRFILPShY---IKGKRSSSDHVEEAGNYIKDLQ 122
                          79***************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1266139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-867126No hitNo description
PROSITE profilePS5088812.41169121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-970138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-970122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDFADSSSFT LDFANENYLD FSSLMTPSTL ISFQEPNPCN PIIQIDGRQK VRETTMTSEI  60
RKGDDEPKNK RAKHKDIERQ RRQEATTLYK SLRFILPSHY IKGKRSSSDH VEEAGNYIKD  120
LQKKIKEISE KRDRIKSTVT HRSSTSRCSL RPLASSTSST CSCVGDTHMA VVVRPCLIGL  180
EVVVSCCLRH ESFLSSVLQL LAQDQYCLNV VSCISTRQPQ SFIHTIVSEV VEGIEVYHSE  240
IHEKIMKMGR SSYEYLY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16981KRAKHKDIERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0568s0165.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303696.11e-177transcription factor bHLH55
SwissprotQ9LN951e-124BH055_ARATH; Transcription factor bHLH55
TrEMBLR0I2Y41e-176R0I2Y4_9BRAS; Uncharacterized protein
STRINGCagra.0568s0165.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-126bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]