PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0558s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 299aa    MW: 33966.2 Da    PI: 7.7692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0558s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-151462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd +l+d++++ G+g +W + +++ g++R++k+c++rw++yl
  Cagra.0558s0004.1.p 14 RGPWSPEEDAKLKDYIEKQGTGgNWIALPHKAGLRRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding42.81.2e-1369111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +T+eEd +++ +++  G++ W+ Ia+++  gRt++++k++w++
  Cagra.0558s0004.1.p  69 GDFTEEEDNIIYSLFASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111
                          789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.148962IPR017930Myb domain
SuperFamilySSF466894.9E-2711109IPR009057Homeodomain-like
SMARTSM007172.6E-111364IPR001005SANT/Myb domain
PfamPF002492.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-231569IPR009057Homeodomain-like
CDDcd001678.80E-81662No hitNo description
PROSITE profilePS5129422.00663117IPR017930Myb domain
SMARTSM007173.3E-1267115IPR001005SANT/Myb domain
PfamPF002499.2E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2470118IPR009057Homeodomain-like
CDDcd001677.61E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009785Biological Processblue light signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN  60
YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAT  120
MAPPPPHHHL AIGTSISPPP SSSSHYNMIN SLHPYNPSIS TNQPLTPHQG MMMTMMGQQQ  180
QLLYQEDMGS LVNSPNRNKL IMSHQEDSHE QSTNKGIMLL SDVRSGSSTT STVTRVKMEH  240
RDHHHHHHEE DERSMSSVVI EDYGMEEIKQ LIGSSCTSSS NSLWFDENKT EDKFMLYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0558s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195770.0AY519577.1 Arabidopsis thaliana MYB transcription factor (At2g36890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294706.11e-180transcription factor RAX2
SwissprotQ9SJL71e-156RAX2_ARATH; Transcription factor RAX2
TrEMBLR0HDJ31e-179R0HDJ3_9BRAS; Uncharacterized protein
STRINGCagra.0558s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-153MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]