PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0549s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 302aa    MW: 32957.2 Da    PI: 6.5071
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0549s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.27.7e-334295255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         prlrWtp+LH++Fv+ave LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR 
  Cagra.0549s0004.1.p 42 PRLRWTPDLHRCFVNAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRG 95
                         8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1393898IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-303895IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-234295IPR006447Myb domain, plants
SuperFamilySSF466891.31E-144294IPR009057Homeodomain-like
PfamPF002491.2E-84394IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRCGGGRNG NGNGNGNFTG VGFNGNGGGG GGVRPYVRSP VPRLRWTPDL HRCFVNAVEI  60
LGGQHRATPK LVLKMMDVKG LTISHVKSHL QMYRGSKLTL GKPDTVEESS SSSSIRRRGR  120
RRQDSGEEDY HLHDNLSLLS SSRNDCLLGF HSFPLSSHSP LLLRGGGGGG RSKELQQTSA  180
ESGGYDDDDD FLHIINMNTT IHTTTFPSHH LPSSKKTEEW REQEQEQEEE EEEEEEEDLS  240
LSLSLNHHHH HHWRSNGSSV SETSEAAVST CSAPFVSKDC FASSSKIDDL NLNLSISLLG  300
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-184397357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-184397357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-184397357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-184397357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0549s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2295113e-86AK229511.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL17-14-B12.
GenBankBT0085563e-86BT008556.1 Arabidopsis thaliana clone U50358 unknown protein (At2g02060) mRNA, complete cds.
GenBankBT0086993e-86BT008699.1 Arabidopsis thaliana clone RAFL17-14-B12 (R50358) unknown protein (At2g02060) mRNA, complete cds.
GenBankKJ1389243e-86KJ138924.1 Arabidopsis thaliana glycosyltransferase (AT2G02060) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291399.21e-125putative Myb family transcription factor At1g14600 isoform X1
SwissprotQ700D96e-65MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLR0HK961e-127R0HK96_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0549s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-44G2-like family protein