PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0454s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 273aa    MW: 31122.9 Da    PI: 8.9364
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0454s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-192067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd ll+d+v+++G g+W+++ar  g++R +k+c++rw +yl
  Cagra.0454s0003.1.p 20 KGPWTSEEDRLLIDYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 67
                         79********************************************97 PP
2Myb_DNA-binding51.13.1e-1673117147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Cagra.0454s0003.1.p  73 RGQITPNEETIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117
                          7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2191567IPR017930Myb domain
SuperFamilySSF466892.97E-3017114IPR009057Homeodomain-like
SMARTSM007172.6E-161969IPR001005SANT/Myb domain
PfamPF002492.2E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-232174IPR009057Homeodomain-like
CDDcd001674.72E-122267No hitNo description
PROSITE profilePS5129424.45168122IPR017930Myb domain
SMARTSM007175.5E-1472120IPR001005SANT/Myb domain
PfamPF002494.2E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2475121IPR009057Homeodomain-like
CDDcd001675.88E-1077118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSLWGVMGGG WGMVEEGWRK GPWTSEEDRL LIDYVRLHGE GRWNSVARLA GLKRNGKSCR  60
LRWVNYLRPD LKRGQITPNE ETIILELHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK  120
KTKSPTNNAE KTKNRLFKRQ QFQQQRQMEL QQEQQLLQFN QIDMKKIMSL LDDDNNCDNT  180
FSSSSSGSSS GEGGAFYVPH QITYSTTSSG SDPNTNGYYP VVPVTIPEAN VNEDTTIWEG  240
LWNLDFEGQG SFGGAACAPR KQCFQNMVLP FC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-262012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0454s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5502980.0AY550298.1 Arabidopsis thaliana MYB transcription factor (At3g24310) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298303.11e-154transcription factor MYB13
TrEMBLR0G6X21e-153R0G6X2_9BRAS; Uncharacterized protein
STRINGCagra.0454s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-133myb domain protein 305