PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0381s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 326aa    MW: 36141.2 Da    PI: 8.56
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0381s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-0890114326
                          S---SGGGGTS.--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartG.tCkyGdrCkFaHg 26 
                           e C+ f+r G  C++Gd C F+Hg
  Cagra.0381s0001.1.p  90 GEVCPEFSRHGgDCSRGDECVFSHG 114
                          589*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.6E-487115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.02388116IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-691114IPR000571Zinc finger, CCCH-type
SMARTSM003562.5124147IPR000571Zinc finger, CCCH-type
PfamPF146080.28130145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDVGHINRPT VDISPRKLLS SAKSPSSSPL QDYSYDSDSE DPYAGDHFRM YEFKIRRCTR  60
SRSHDWTDCP FSHPGEKARR RDPRRFHYTG EVCPEFSRHG GDCSRGDECV FSHGVFECWL  120
HPSRYRTEAC KDGKHCKRKV CFFAHSPRQL RVLPPSPPEN FISGGSASSS PASVLGHKNN  180
RCCLFCSHSP TSTLLGLSRS PSSSPPLSPA DKAAAFSRLS RRRTAVLNEL ISSLDSFSLT  240
EALSASSSSS PGTMPVSTAA MIASANLTNH HNHRIPPWLD VGDRDLQIQQ TSPLQFSHSP  300
SSTPSYLHSQ LQPPSSSFFS DDFTPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0381s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280675.10.0zinc finger CCCH domain-containing protein 61
SwissprotQ9FKW21e-164C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLR0GQY40.0R0GQY4_9BRAS; Uncharacterized protein
STRINGCagra.0381s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-131C3H family protein