PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0345s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 274aa    MW: 31148.9 Da    PI: 5.6057
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0345s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like666.5e-21226274251
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                           r++W +eLH+rF++av++  G ekA+Pk+ile m+v+ L++e+v+SHLQ
  Cagra.0345s0004.1.p 226 RRVVWDTELHQRFLDAVNSV-GFEKAVPKKILEQMNVENLSRENVASHLQ 274
                          69******************.9***************************9 PP
2Response_reg388.5e-14411491108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+ d++p+ + +l++ l+  +y +v+++ + +ea++ll++++  +D+ ++  + ++ d +++++ei +e  +l  i+++  ++ e +++
  Cagra.0345s0004.1.p  41 VLVFDEDPAYLLILERHLQAFRY-RVTTCNEESEAMTLLRDHRnmFDIAMIHANNSDGDRIRFISEIGSEM-DLSFIIISKDDSVESVVK 128
                          7999*******************.*****************999***********************7755.8***********999999 PP

                          HH.HTTESEEEESS--HHHHH CS
         Response_reg  89 al.kaGakdflsKpfdpeelv 108
                           +    a d+l Kp+ pe+l+
  Cagra.0345s0004.1.p 129 WMsTTTACDYLIKPIRPEDLR 149
                          997788*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.42E-1937167IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-1838179No hitNo description
SMARTSM004480.003539152IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011023.27140156IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-741150IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.60E-642160No hitNo description
Gene3DG3DSA:1.10.10.603.0E-20222274IPR009057Homeodomain-like
PROSITE profilePS5129412.065222274IPR017930Myb domain
SuperFamilySSF466894.3E-13223274IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-20226274IPR006447Myb domain, plants
PfamPF002491.1E-5227274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAVTFDHGGV PASDGGGDPF GDQHPNFSDV FPRNFPESLR VLVFDEDPAY LLILERHLQA  60
FRYRVTTCNE ESEAMTLLRD HRNMFDIAMI HANNSDGDRI RFISEIGSEM DLSFIIISKD  120
DSVESVVKWM STTTACDYLI KPIRPEDLRM IFKHVVKKFL GRRRSVVTVE GDQEKAAARE  180
KSSSVGDSTI RSPDDDQAGK RSSCPNAEVV NEDDHDHDRV TSKKRRRVVW DTELHQRFLD  240
AVNSVGFEKA VPKKILEQMN VENLSRENVA SHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-16221274154ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223227KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0345s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633365.10.0putative two-component response regulator-like APRR4
SwissprotQ9FJ161e-112APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLR0EZ820.0R0EZ82_9BRAS; Uncharacterized protein
STRINGCagra.0345s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-115pseudo-response regulator 4