PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G49240.1
Common NameAPRR4, K21P3.12, PRR4
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 292aa    MW: 33817.5 Da    PI: 6.588
Description pseudo-response regulator 4
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G49240.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.25.1e-20223272151
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                  k r++W +eLH++F++av+ L G e+A+Pk+il++mkv+ +++e+v+SHLQ
  AT5G49240.1 223 KRRVVWDEELHQNFLNAVDFL-GLERAVPKKILDVMKVDYISRENVASHLQ 272
                  689******************.***************************** PP
2Response_reg48.26.1e-17441511108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++p+ + +l++ l+k +y +v+ + +  +a+++l++++  +Dl ++ ++  + d +++l+ei +e  +lpii+++  ++ + +++ +  Ga 
   AT5G49240.1  44 VLVFDEDPSYLLILERHLQKFQY-QVTICNEVNKAMHTLRNHRnrFDLAMIQVNNAEGDIFRFLSEIGSEM-DLPIIIISEDDSVKSVKKWMINGAA 138
                   8999*******************.***************999999**********************7755.8************************ PP

                   EEEESS--HHHHH CS
  Response_reg  96 dflsKpfdpeelv 108
                   d+l Kp+ pe+l+
   AT5G49240.1 139 DYLIKPIRPEDLR 151
                   **********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.17E-2240166IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-2341182No hitNo description
SMARTSM004484.1E-742154IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.37843158IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-1144151IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.16E-1145157No hitNo description
Gene3DG3DSA:1.10.10.601.4E-18221272IPR009057Homeodomain-like
SuperFamilySSF466891.18E-13221278IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-25223277IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000156Molecular Functionphosphorelay response regulator activity
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQPLNMAEIL DHRGVLTDGD DGPFRNLTNF YDMFSSNFPE GLRVLVFDED PSYLLILERH  60
LQKFQYQVTI CNEVNKAMHT LRNHRNRFDL AMIQVNNAEG DIFRFLSEIG SEMDLPIIII  120
SEDDSVKSVK KWMINGAADY LIKPIRPEDL RIVFKHLVKK MRERRSVVTG EAEKAAGEKS  180
SSVGDSTIRN PNKSKRSSCL EAEVNEEDRH DHNDRACASS AKKRRVVWDE ELHQNFLNAV  240
DFLGLERAVP KKILDVMKVD YISRENVASH LQVTFLIYNI IVHFQQHFCF YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17219272154ARR10-B
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184230050.0
Genevisible248649_at0.0
Expression AtlasAT5G49240-
AtGenExpressAT5G49240-
ATTED-IIAT5G49240-
Functional Description ? help Back to Top
Source Description
TAIRmember of Response Regulator: Pseudo
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G49240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G49240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168720.0AB016872.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21P3.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199735.10.0pseudo-response regulator 4
SwissprotQ9FJ160.0APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A178UBX40.0A0A178UBX4_ARATH; PRR4
STRINGAT5G49240.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Publications ? help Back to Top
  1. Makino S, et al.
    Genes encoding pseudo-response regulators: insight into His-to-Asp phosphorelay and circadian rhythm in Arabidopsis thaliana.
    Plant Cell Physiol., 2000. 41(6): p. 791-803
    [PMID:10945350]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Hwang I,Sheen J
    Two-component circuitry in Arabidopsis cytokinin signal transduction.
    Nature, 2001. 413(6854): p. 383-9
    [PMID:11574878]
  4. Hwang I,Chen HC,Sheen J
    Two-component signal transduction pathways in Arabidopsis.
    Plant Physiol., 2002. 129(2): p. 500-15
    [PMID:12068096]
  5. Pischke MS,Huttlin EL,Hegeman AD,Sussman MR
    A transcriptome-based characterization of habituation in plant tissue culture.
    Plant Physiol., 2006. 140(4): p. 1255-78
    [PMID:16489130]