PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0338s0020.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 371aa    MW: 42303 Da    PI: 4.7474
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0338s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-0690113226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          k  lC ff + G+C+ G +CkF+H+
  Cagra.0338s0020.1.p  90 KSILCEFFKA-GQCQKGFKCKFSHD 113
                          6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-588114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-688113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.27288115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-490113IPR000571Zinc finger, CCCH-type
SMARTSM003563.1159196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.793159197IPR000571Zinc finger, CCCH-type
PfamPF165432.1E-17217295IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MPPKQQPKAD LAKKQKQVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD ASKAAAKKKK  60
EEEKAREQEL NELFKVAISQ PKVPVGVDPK SILCEFFKAG QCQKGFKCKF SHDLNIQRKG  120
EKIDIYSDKR DEDGDMDEWD QETLEKVVES KKNEYNQNKP TDIVCKYFLD AVEKKQYGWF  180
WSCPNGGKEC HYRHALPPGY VLKSQMKALL EEESSKKLAV EDEIENERAK LQTATQMTPA  240
LFMEWKRKKI AERDAGLAAS QAERAKNDRM SGRELFLSNA SLFVDDAEAC EEYEREREQE  300
ETEQKAKNKE TEAGTSKSSG DAEQSSKEVD EEDEDDDDDD DLDMDELDEL EASLSKTSIQ  360
IREPNNEGSS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0338s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065691e-85AC006569.5 Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence.
GenBankCP0026851e-85CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297939.10.0zinc finger CCCH domain-containing protein 21
SwissprotQ9SK740.0C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLR0G5K70.0R0G5K7_9BRAS; Uncharacterized protein
STRINGCagra.0338s0020.1.p0.0(Capsella grandiflora)
STRINGXP_006297939.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.10.0C3H family protein