PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0316s0082.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 275aa    MW: 30782.5 Da    PI: 8.0766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0316s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08446854
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         rE+ RR+++N+ f eL  +l +      +K++Ka+iL+ +v+ +k+L
  Cagra.0316s0082.1.p  4 REKLRREKLNEHFVELGNVLDPE----RPKNDKATILTDTVQLLKEL 46
                         8******************9987....69***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.462146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-6252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.85E-6450No hitNo description
PfamPF000102.5E-6446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-12462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
KAGREKLRRE KLNEHFVELG NVLDPERPKN DKATILTDTV QLLKELTSEV NKLKSEYTAL  60
TDESRELTQE KNDLREEKTA LKSDIENLNL QYQQRLRSMS PWGAAMDHTV MMAPPPSFPY  120
PMPMAMPPGS IPMHPSMPSY TYFGNQNPSM IPAPCPTYMP YMPPNTVVEQ QSVHIPQNPG  180
NRSREPRAKV SRESRSEKAE DSNEVATQLE LKTPGSTSDK DTLQRPEKTK RCKRNNNNSI  240
EESSHSSKCS SSPSIRDHSS SSSVAGGQKP DDSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0316s0082.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3175070.0AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBankAY0651070.0AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.
GenBankAY0817030.0AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641726.10.0transcription factor bHLH121
SwissprotQ9LT231e-172BH121_ARATH; Transcription factor bHLH121
TrEMBLR0HND40.0R0HND4_9BRAS; Uncharacterized protein
STRINGCagra.0316s0082.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-160bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]