PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0301s0088.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 459aa MW: 50401.3 Da PI: 7.1856 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.2 | 4.2e-11 | 45 | 70 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff+rtG+C yG++C+++H+ Cagra.0301s0088.1.p 45 PGERDCQFFLRTGQCGYGNTCRYNHP 70 5789*********************9 PP | |||||||
2 | zf-CCCH | 35.7 | 1.4e-11 | 91 | 115 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG CkyG++Ck++H++ Cagra.0301s0088.1.p 91 QPDCEYFLKTGACKYGPTCKYHHPK 115 789********************96 PP | |||||||
3 | zf-CCCH | 32.7 | 1.3e-10 | 136 | 159 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+++++tG C++G CkF+H+ Cagra.0301s0088.1.p 136 EKSCPYYMQTGLCRFGVACKFHHP 159 667********************8 PP | |||||||
4 | zf-CCCH | 40.2 | 5.6e-13 | 265 | 290 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++Crff+ tGtCkyGd Ck++H++ Cagra.0301s0088.1.p 265 ERAECRFFMNTGTCKYGDDCKYSHPK 290 689*********************96 PP | |||||||
5 | zf-CCCH | 30.5 | 6.1e-10 | 309 | 335 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f ++G+Ck+G++Ck+ H++ Cagra.0301s0088.1.p 309 PGEPACGNFKAYGFCKFGATCKYDHSM 335 57899********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.455 | 44 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-6 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 46 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-5 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 50 | 69 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.103 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-6 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 94 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-5 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-8 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 138 | 158 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-7 | 260 | 292 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.718 | 263 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 264 | 290 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-10 | 265 | 290 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-7 | 269 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 305 | 334 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.131 | 308 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-5 | 308 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-7 | 310 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MSETQQQVQN STGSIRSPEK IEDSFRRMKV NEDNLEQVSP YPDRPGERDC QFFLRTGQCG 60 YGNTCRYNHP LTHLPQGAIY YKDQLPERVG QPDCEYFLKT GACKYGPTCK YHHPKDRNGA 120 GPVLFNVLGF PMRQGEKSCP YYMQTGLCRF GVACKFHHPH PQAPNGHSAY GMSSFPSVGF 180 PYGSGMTMMS LPPATYGAMP RPQVPQSQAY MPFMVAPSQG LLPPQGWATY MAASNPIYNV 240 KTQPDSSSSA SVPVAVTSHH HSFPERAECR FFMNTGTCKY GDDCKYSHPK ERLLQSPNLL 300 NHIVLPVRPG EPACGNFKAY GFCKFGATCK YDHSMPLNPY NNTGMAMSSL PTPYPYAPPI 360 STHLRISSPP SPSDSTTLAN GKPAPESQSS ETEKQDDTAT QPEKSEVHDP LPASRSDSTT 420 LPNGKPDAED PSSETEKQDD KPAQPDSSKV QESSVIST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0301s0088.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF138744 | 0.0 | AF138744.1 Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294179.1 | 0.0 | zinc finger CCCH domain-containing protein 26 | ||||
Swissprot | O48772 | 0.0 | C3H26_ARATH; Zinc finger CCCH domain-containing protein 26 | ||||
TrEMBL | R0FVV6 | 0.0 | R0FVV6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0301s0088.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32930.1 | 0.0 | zinc finger nuclease 2 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0301s0088.1.p |