PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0239s0057.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 265aa    MW: 29008.1 Da    PI: 8.294
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0239s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18180214135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Cagra.0239s0057.1.p 180 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 214
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.5E-952264IPR016679Transcription factor, GATA, plant
SMARTSM004014.8E-15174224IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-14178238No hitNo description
Gene3DG3DSA:3.30.50.101.6E-13178212IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.227178210IPR000679Zinc finger, GATA-type
CDDcd002029.92E-14179226No hitNo description
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
PfamPF003207.3E-16180214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDLYGLSSPD LLRIDDLLDF SNEDIFSASS NNSGGSTAAT SSSSFPPPQN PNFHHHHLPS  60
SADHHSFLHD ICVPSDDAAH LEWLSQFVDD SFADFPANPL GGTMASVKSE TSFPGKPRSK  120
RSRAPAPFAG TWSPMPPESE HQQLHNAAKF KPKKEQSGGG GGRHQSSSSE SGEGGGMRRC  180
THCASEKTPQ WRTGPLGPKT LCNACGVRFK SGRLVPEYRP ASSPTFVLTQ HSNSHRKVME  240
LRRQKEVMRQ PQQVQLHHHH HHPF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0239s0057.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294606.11e-156GATA transcription factor 2
RefseqXP_010506442.11e-157PREDICTED: GATA transcription factor 2
SwissprotO497411e-152GATA2_ARATH; GATA transcription factor 2
TrEMBLR0HDA61e-155R0HDA6_9BRAS; GATA transcription factor
STRINGCagra.0239s0057.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-119GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]