PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0157s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 306aa    MW: 34415.8 Da    PI: 5.4332
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0157s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573106.91.5e-3394193297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdq 86 
                          lf r++seeDe+vlL+G+idf+ k+g +p++++d fye+vkksisf+v+k+qlv+K+r+LK+Kf +k  k     ++++++++fsk+ d+
  Cagra.0157s0008.1.p  94 LFARIFSEEDEVVLLKGIIDFTGKNG-NPTENMDVFYEYVKKSISFNVTKDQLVTKVRNLKRKFDEKILKsldkgISEEDKIVFSKTFDK 182
                          799**********************9.**************************************99888788889999*********** PP

               DUF573  87 kifelskkiWg 97 
                           +f+ls+kiWg
  Cagra.0157s0008.1.p 183 RCFDLSRKIWG 193
                          **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-2795193IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAPKQPENVP MVTSSEDDEE ESGSVQNKSD SSSGEESDSS SDEESQPAVS PKKDEKTPVK  60
TSVVSKPSSS KTTTKPTHVV SSLVKTDEKP KQNLFARIFS EEDEVVLLKG IIDFTGKNGN  120
PTENMDVFYE YVKKSISFNV TKDQLVTKVR NLKRKFDEKI LKSLDKGISE EDKIVFSKTF  180
DKRCFDLSRK IWGIDGVLPS KSKKVRQEEL GKRVKDEEDE KPERHVISSS SLSFGQEYVS  240
FFKAENPTCV FDEAEWIAIL DECKDGPKKR EWEAKLNKTK ALKEGIVMAK LDFATFVTKA  300
IFKQD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0157s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295934.10.0probable transcription factor At4g01260
SwissprotO046087e-77STKLR_ARATH; Probable transcription factor At4g01260
TrEMBLR0G0950.0R0G095_9BRAS; Uncharacterized protein
STRINGCagra.0157s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1913277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01260.11e-70DNA-binding storekeeper protein-related transcriptional regulator