PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0096s0044.2.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 378aa MW: 42758.9 Da PI: 6.5945

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0096s0044.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.1	5.9e-11	92	134	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +k rr+++NReAAr+sR+RKka++++Lee +L++ ++L Cagra.0096s0044.2.p 92 DKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQELE 134 6899**************************8888887776554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.4E-4	84	147	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.3E-8	90	135	No hit	No description
PROSITE profile	PS50217	9.404	91	135	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.1E-8	92	135	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.77E-6	93	135	No hit	No description
PROSITE pattern	PS00036	0	96	111	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.9E-28	179	253	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MMSSSSSPTQ LASLRDMGIY EPFQQIVGWG NVFKSDINDH SPNTATSSII QVDARVDDHN 60 HNKTNYASSS HNQIEAEPSS NDNQDDDGRI HDKMKRRLAQ NREAARKSRL RKKAYVQQLE 120 ESRLKLSQLE QELEKVKQQG LRNSSNSSYI GPAGNIINTG IASFEMEYSH WLEEQSRRVS 180 EIRIALQSHI SDVELRMLVE SCLNHYANLF QMKLNAAKAD VFYLISGMWR TSTERFFQWI 240 GGFRPSELLN VVMPYLQPLT DQQILEVRNL QQSSQQAEDA LSQGIDKLQQ SLAESIVTDA 300 VIESTDYPAH MAAAIENLQA LEGFVNQADH LRQQTLQQMA KILTTRQSAR GLLALGEYLH 360 RLRALSSLWA ARPREAT*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MMSSSSSPTQ LASLRDMGIY EPFQQIVGWG NVFKSDINDH SPNTATSSII QVDARVDDHN  60
HNKTNYASSS HNQIEAEPSS NDNQDDDGRI HDKMKRRLAQ NREAARKSRL RKKAYVQQLE  120
ESRLKLSQLE QELEKVKQQG LRNSSNSSYI GPAGNIINTG IASFEMEYSH WLEEQSRRVS  180
EIRIALQSHI SDVELRMLVE SCLNHYANLF QMKLNAAKAD VFYLISGMWR TSTERFFQWI  240
GGFRPSELLN VVMPYLQPLT DQQILEVRNL QQSSQQAEDA LSQGIDKLQQ SLAESIVTDA  300
VIESTDYPAH MAAAIENLQA LEGFVNQADH LRQQTLQQMA KILTTRQSAR GLLALGEYLH  360
RLRALSSLWA ARPREAT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0096s0044.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353384	0.0	AK353384.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-N08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023643179.1	0.0	transcription factor TGA7
Swissprot	Q93ZE2	0.0	TGA7_ARATH; Transcription factor TGA7
TrEMBL	R0GHF3	0.0	R0GHF3_9BRAS; Uncharacterized protein
STRING	Cagra.0096s0044.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cagra.0096s0044.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]