PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0094s0010.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 442aa    MW: 47609.7 Da    PI: 7.5311
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0094s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.5e-07117138426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + C+f+   G C+yGd+C++ H+
  Cagra.0094s0010.1.p 117 KVCNFWVD-GNCSYGDKCRYLHC 138
                          68**9*99.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.0843359IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6113137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333113140IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5115139IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4117138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5117136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.5E-16137253IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.5E-5144183IPR001680WD40 repeat
SuperFamilySSF509781.19E-46145434IPR017986WD40-repeat-containing domain
PfamPF004000.0011147183IPR001680WD40 repeat
PROSITE profilePS5029420.514151400IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.182151192IPR001680WD40 repeat
PRINTSPR003202.0E-6170184IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780170184IPR019775WD40 repeat, conserved site
SMARTSM003206.6223260IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.108.2E-31254432IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.025267304IPR001680WD40 repeat
PfamPF004000.081271304IPR001680WD40 repeat
PROSITE profilePS5008211.511274313IPR001680WD40 repeat
PRINTSPR003202.0E-6291305IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4307344IPR001680WD40 repeat
PfamPF004000.0047309343IPR001680WD40 repeat
PRINTSPR003202.0E-6331345IPR020472G-protein beta WD-40 repeat
SMARTSM003204.9348391IPR001680WD40 repeat
SMARTSM003204.7394431IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDFDLNGGNK RVFNRLGGGG GGGGSNRPMA PNDTRQKVCF HWRAGRCNRS PCPYLHRELP  60
GPGPGQGQGA PGYTNKRVAE ESGFAGPSHR RGPGFNGNSN SSWGRFGGNR TVTKTEKVCN  120
FWVDGNCSYG DKCRYLHCWS KGDSFSLLTQ LDGHEKLVSG IALPSGSDKL YTGSKDETLR  180
VWDCASGQCT GVLKLGGEVG CVLSEGPWLL VGMPNLVKAW NIETNADQSL NGPVGQVYSL  240
VVGTDLLFAG TQDGSILAWR FNTATNCFEP AASLTGHTLA VVTLYVGANR LYSGSMDKSI  300
KVWSLDNLQC IQTLTDHTSV VMSLICWDQF LLSCSLDNTV KIWAAMEGGN LEVTYTHKEE  360
HGVLALCGVH DAEAKPVLLC SCNDNTLRLY DLPSFTERGK IFAKQEIRAI QIGPGGIFFT  420
GDGTGQVKVW KWCTEPTTAS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-211484308323Tako8
6g6n_A5e-211484308323Tako8
6g6n_B5e-211484308323Tako8
6g6n_C5e-211484308323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0094s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520640.0AJ252064.1 Arabidopsis thaliana partial mRNA for zfwd2 protein (zfwd2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279619.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLR0EU030.0R0EU03_9BRAS; Uncharacterized protein
STRINGCagra.0094s0010.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein