PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0084s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Nin-like | ||||||||
Protein Properties | Length: 232aa MW: 27053.9 Da PI: 8.5712 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.7 | 3.6e-26 | 120 | 170 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++++++++F+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl Cagra.0084s0050.1.p 120 QDKLEMDEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 170 6799*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.03 | 106 | 191 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-21 | 123 | 170 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDPNSLRRLE SPKIKKEYEP DSFYDMLDTL PPLNSLLDIE DVKPNPGLHF EFQYTSFEDF 60 FKNMEVDNII SSDIHMSSTQ EPYVSSGSSS PLAVENDCLS SNERCEKRIV KKRNSKKKRQ 120 DKLEMDEIKQ FFDRPIMKAA KELNVGLTVL KKRCRELGIY RWPHRKLKSL NSLIKNLKSV 180 GMEDEVKNLE EHRVLIEQEP DAELSDGTKK LRQACFKANY KKRKSLAHDY Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0084s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282071.2 | 1e-167 | protein RKD4 | ||||
Swissprot | Q9LVU8 | 1e-119 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | R0GE40 | 1e-165 | R0GE40_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.0084s0050.1.p | 1e-169 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12585 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 1e-107 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0084s0050.1.p |
Publications ? help Back to Top | |||
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