PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0084s0027.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 374aa    MW: 41291.1 Da    PI: 4.822
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0084s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.7e-31186244259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+
  Cagra.0084s0027.1.p 186 SDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 244
                          79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-31172246IPR003657WRKY domain
SuperFamilySSF1182904.84E-27178246IPR003657WRKY domain
PROSITE profilePS5081133.281180246IPR003657WRKY domain
SMARTSM007746.1E-39185245IPR003657WRKY domain
PfamPF031063.3E-26187244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSSDDWDLNA VVRSCSSSVS TATTINTNSC VGHEEDDGGN CKQQQDPPLP PPLFTHIHGD  60
RETSSSCNEL QDSCKPFLPV TTTTTTTWSP PPLLPPSLAS SSSPNVLMKQ EQVHHLESSS  120
SSQDHQKPPL GVRVFPPSTS SSSVFVFRGQ RDQLLQQQSQ PPLRSRKRKN QQKRTICHVT  180
QENLSSDMWA WRKYGQKPIK GSPYPRNYYR CSSSKGCLAR KQVERSNLDP NIFIVTYTGE  240
HTHPRPTHRN SLAGSTRNKS QHVNPIPKPD SSSGQTVLGS NTVKDEIHLS PTTPLKGNDD  300
VRGTNGDEDM MSQEVNMDEE EEEEEEEVEE EDDEDDDVDD ILIPNLAVRD RDDLFFAGNF  360
SSWSAGSAGD GGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-191872471880Disease resistance protein RRS1
5w3x_D1e-191872471880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0084s0027.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280638.10.0probable WRKY transcription factor 27
SwissprotQ9FLX81e-146WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLR0EXF50.0R0EXF5_9BRAS; Uncharacterized protein
STRINGCagra.0084s0027.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-121WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]