PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0050s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 40198 Da PI: 6.3746 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 5.8e-52 | 16 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPt+eel+++yL+kkv++ +++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg Cagra.0050s0024.1.p 16 VPPGFRFHPTEEELLQYYLRKKVNSIEIDL-DVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATG 104 69****************************.99**************962433332455******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk ++s +g+ +g++ktLvfykgrap+g+k+dW+mheyrl Cagra.0050s0024.1.p 105 RDKIIYS-NGRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 144 *******.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-59 | 10 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.578 | 16 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-28 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MMSKSMSISV NGQSQVPPGF RFHPTEEELL QYYLRKKVNS IEIDLDVIRD VDLNKLEPWD 60 IQEMCKIGTT PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKIIY SNGRRIGMRK 120 TLVFYKGRAP HGQKSDWIMH EYRLDDNIVS PEDVTVREVM NIIGEATQDE GWVVCRIFKK 180 KNLHKTLNSP VGGASLSGGG DTARTSSSQI FNEDTLEQFL ELMGRSCKEE LNLDPFMKLP 240 NLESPNSQTI NNCHVSSPDT NHNIHVSNVV DTSFVTSWAA LDRLVASQLN GPTSYSSMAA 300 VDESHVDQDH PYPSLNRSAS YHAGLPQEYT PEMELWNTTT SSLSPSPGPF CHVSNGSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-48 | 13 | 182 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-48 | 13 | 182 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-48 | 13 | 182 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-48 | 13 | 182 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-48 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 7e-48 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 7e-48 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 7e-48 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 7e-48 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 7e-48 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 7e-48 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 7e-48 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 6e-48 | 13 | 182 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-48 | 13 | 182 | 14 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0050s0024.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT020413 | 0.0 | BT020413.1 Arabidopsis thaliana At2g46770 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293486.1 | 0.0 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 0.0 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | R0HAF6 | 0.0 | R0HAF6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0050s0024.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0050s0024.1.p |