PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g16470

Common Name

GSCOC_T00038187001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 403aa MW: 45606.5 Da PI: 5.2645

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g16470	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.4	1.2e-25	86	167	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++aLi +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk+k++ ++ s +++y++++e Cc11_g16470 86 WVQEETRALISLRREIDSLFNTSKSNKHLWDQISLKMREKGFDRSPTMCTDKWRNLLKEFKKVKQNGDRN---GSAKMSYYKEIE 167 **************************************************************999874...566899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-4	78	144	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.618	78	142	IPR017877	Myb-like domain
SMART	SM00717	4.9E-5	82	144	IPR001005	SANT/Myb domain
CDD	cd12203	1.58E-28	84	149	No hit	No description
Pfam	PF13837	1.6E-20	85	169	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MYVSEQPPRA IDFYKEEDNP EAATGDMIIE VSTANNHLPP PQHRQVLGVG GGGDTTSSGG 60 EDNTNTTHPL SSSSDLKAPK KRAETWVQEE TRALISLRRE IDSLFNTSKS NKHLWDQISL 120 KMREKGFDRS PTMCTDKWRN LLKEFKKVKQ NGDRNGSAKM SYYKEIEEIL RERSKNSSSY 180 KSPPPTSSNK VDSFMQFSDK GIDDTSITFE TVEGDGRQPL NLERRLDHDG HPLAITATEA 240 VAASEVSPWN WRENPGNGHQ NASYEGRVIS VKWGDYTKRI GIDGTPDGIK EAIKATFRLR 300 TKRAFWLEDD NNIVRTLDRD MPLGNYTLHV DEGSLTIKFC LYEEADDLPV HTEDKTFYSE 360 DDFRDFLSRR GWTCLREYDG YRNIDSLDDL CPGAAYRGVN LG*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MYVSEQPPRA IDFYKEEDNP EAATGDMIIE VSTANNHLPP PQHRQVLGVG GGGDTTSSGG  60
EDNTNTTHPL SSSSDLKAPK KRAETWVQEE TRALISLRRE IDSLFNTSKS NKHLWDQISL  120
KMREKGFDRS PTMCTDKWRN LLKEFKKVKQ NGDRNGSAKM SYYKEIEEIL RERSKNSSSY  180
KSPPPTSSNK VDSFMQFSDK GIDDTSITFE TVEGDGRQPL NLERRLDHDG HPLAITATEA  240
VAASEVSPWN WRENPGNGHQ NASYEGRVIS VKWGDYTKRI GIDGTPDGIK EAIKATFRLR  300
TKRAFWLEDD NNIVRTLDRD MPLGNYTLHV DEGSLTIKFC LYEEADDLPV HTEDKTFYSE  360
DDFRDFLSRR GWTCLREYDG YRNIDSLDDL CPGAAYRGVN LG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	6e-43	80	165	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027150731.1	0.0	trihelix transcription factor GT-4
Swissprot	Q9FX53	1e-164	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A068UY15	0.0	A0A068UY15_COFCA; Uncharacterized protein
STRING	XP_009784713.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-158	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]