PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g12740
Common NameGSCOC_T00032276001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 275aa    MW: 31518.5 Da    PI: 7.8821
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g12740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.18.4e-5491341128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdeel+++yL++++ ++++++ ++i+evdiyk++PwdLp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s +++
  Cc11_g12740   9 LPPGFRFHPTDEELIMYYLRNQAISRPCPV-SIIPEVDIYKFDPWDLPEKTEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKSIYS-GSK 104
                  79****************************.89***************99999*****************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   vg+kk Lvfy+gr pkg ktdW+mheyrl
  Cc11_g12740 105 YVGVKKALVFYQGRPPKGIKTDWIMHEYRL 134
                  ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-664161IPR003441NAC domain
PROSITE profilePS5100561.4759161IPR003441NAC domain
PfamPF023652.3E-2610134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVGRNSSDLP PGFRFHPTDE ELIMYYLRNQ AISRPCPVSI IPEVDIYKFD PWDLPEKTEF  60
GENEWYFFTP RDRKYPNGVR PNRAAVSGYW KATGTDKSIY SGSKYVGVKK ALVFYQGRPP  120
KGIKTDWIMH EYRLSEPRSQ PNKQNGSMRL DDWVLCRIYK KKNLGKALDI KAEDQSTETL  180
TTADAASCEP QQTQLSKFPR ICSLSHLWEM ECMGTISQLF GDNSYNAVYD NQNIVNSNGN  240
HVSRQLGEVP HQFQGNQSGI LNQPVYVHPV YEFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-71916317167NO APICAL MERISTEM PROTEIN
1ut4_B4e-71916317167NO APICAL MERISTEM PROTEIN
1ut7_A4e-71916317167NO APICAL MERISTEM PROTEIN
1ut7_B4e-71916317167NO APICAL MERISTEM PROTEIN
4dul_A4e-71916317167NAC domain-containing protein 19
4dul_B4e-71916317167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096674.10.0NAC domain-containing protein 2-like
SwissprotK4BNG71e-129NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A068TVP60.0A0A068TVP6_COFCA; Uncharacterized protein
STRINGXP_009598866.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-113NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]