PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g10460

Common Name

GSCOC_T00032574001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 470aa MW: 51742.1 Da PI: 6.5202

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g10460	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.3e-10	187	228	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le+ L++ ++Lk Cc11_g10460 187 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLTQLEQELK 228 788*************************98888877777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-8	183	248	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.484	185	229	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-6	187	230	No hit	No description
Pfam	PF00170	3.1E-7	187	229	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-7	188	232	No hit	No description
PROSITE pattern	PS00036	0	190	205	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-29	268	341	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MQSFKSATAA APAVVTLTNS DMYCRSSIYL RGHEGGGGGR NWTNYVDLGE LEQSSFHQEH 60 AVDLSTSSIY SDMKPSNVVA VSNSSLQFGG LNTNMGSGAM GSSGAVADTG QFLMQKGTML 120 SVGAGGTLGS GNFENWGESG MADHSQQTDT STDVDTDEKS QFHGVRRRTL VGMDSMEQSG 180 ERNGDQKTLR RLAQNREAAR KSRLRKKAYV QQLENSRLRL TQLEQELKQA RQQGVLKASG 240 YTGDQSMSGA LAFDMDYARW LDEHQRMIND LRTAVNSQLG DNELRLLVDG VMSHYDEIFR 300 LKDIGTKSDV FHMLSGMWKT PAERCFMWLG GFRSSEILKI LGDHLEPLTD QQLIGICNLQ 360 QSSQQAEDAL SQGMEALQQS LVETLSSNSL GPSGSSNVAD YMGQMATAMG KLAMLENFLR 420 QADLLRQQTL QQMHRILTTR QAARALLVIN EYMSRLRALS SLWLARPKD*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MQSFKSATAA APAVVTLTNS DMYCRSSIYL RGHEGGGGGR NWTNYVDLGE LEQSSFHQEH  60
AVDLSTSSIY SDMKPSNVVA VSNSSLQFGG LNTNMGSGAM GSSGAVADTG QFLMQKGTML  120
SVGAGGTLGS GNFENWGESG MADHSQQTDT STDVDTDEKS QFHGVRRRTL VGMDSMEQSG  180
ERNGDQKTLR RLAQNREAAR KSRLRKKAYV QQLENSRLRL TQLEQELKQA RQQGVLKASG  240
YTGDQSMSGA LAFDMDYARW LDEHQRMIND LRTAVNSQLG DNELRLLVDG VMSHYDEIFR  300
LKDIGTKSDV FHMLSGMWKT PAERCFMWLG GFRSSEILKI LGDHLEPLTD QQLIGICNLQ  360
QSSQQAEDAL SQGMEALQQS LVETLSSNSL GPSGSSNVAD YMGQMATAMG KLAMLENFLR  420
QADLLRQQTL QQMHRILTTR QAARALLVIN EYMSRLRALS SLWLARPKD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027099671.1	0.0	transcription factor TGA2.3-like
Refseq	XP_027154116.1	0.0	transcription factor TGA2.3-like isoform X1
Swissprot	Q9SX27	1e-173	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A068TZ11	0.0	A0A068TZ11_COFCA; Uncharacterized protein
STRING	EOY02112	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA820	23	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-152	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]