PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g08460
Common NameGSCOC_T00032872001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WOX
Protein Properties Length: 337aa    MW: 38225.9 Da    PI: 7.5219
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g08460genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.8e-2184143357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++t+eql +Lee++++  r+psaee++ +A+kl    +++ ++V++WFqN++a+e++
  Cc11_g08460  84 SRWNPTPEQLMALEEMYRRgVRTPSAEEIKLIAAKLrqfgKIEGKNVFYWFQNHKARERQ 143
                  7*****************99**************************************97 PP
2Wus_type_Homeobox111.74.1e-3683145365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Lee+y++G+rtP++eei+ i+a+L+++Gkie+kNVfyWFQN+kaRerqk+
        Cc11_g08460  83 SSRWNPTPEQLMALEEMYRRGVRTPSAEEIKLIAAKLRQFGKIEGKNVFYWFQNHKARERQKR 145
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.3E-681148IPR001356Homeobox domain
SuperFamilySSF466893.68E-1383149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-984143IPR009057Homeodomain-like
PfamPF000461.4E-1884143IPR001356Homeobox domain
CDDcd000866.55E-785145No hitNo description
PROSITE profilePS5007110.93289144IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MWLKNCEDGV KESRYDALYN QRIRHIFPKS NASMSNCAPC CLIPSNYSSH IGNGIGFPMN  60
YHQTCVNHDE EIKDENHMEP IVSSRWNPTP EQLMALEEMY RRGVRTPSAE EIKLIAAKLR  120
QFGKIEGKNV FYWFQNHKAR ERQKRRRQPD SNSSKNATDV ETLDAKETGF SCKALEGEHN  180
KKLVTTIPAY SSTSKESASM QRSMVTESGT DGWTHLDERE LQKRSQRKIA KGATSLMDMS  240
CMAPNSDLLN TITAPSTLES SGENQQITAL NSSVVSPSCG EDMINYEDGR RNHHTLQLFP  300
LRSDDHCSIK ASETEFKELR TTISSKLPPK QFYEFL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097630.10.0WUSCHEL-related homeobox 6-like isoform X2
TrEMBLA0A068TZK30.0A0A068TZK3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.14e-33WUSCHEL related homeobox 1