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Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cc11_g08290 |
| Common Name | GSCOC_T00032897001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
GRAS |
| Protein Properties |
Length: 406aa MW: 44532.8 Da PI: 6.5093 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc11_g08290 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 456.6 | 1.6e-139 | 42 | 403 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
lv++L++cAea+++++++la+al++++ la +++ +m+++a+yf+eALa+r++r l p++ +++ ++ + f+e++P++kf+h+ta
Cc11_g08290 42 LVHALMACAEAIQQENMKLAEALVKHIGFLAVSQAGAMRKVATYFAEALARRIYR--------LYPTSPHDSAFTDL--LQMHFYETCPYIKFAHFTA 129
689****************************************************........44444443334444..4446*************** PP
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
NqaIlea+++++rvH+iDf+++qG+QWpaLlqaLa Rp+gpps+R+Tg+g+p++++++ l+e+g++La++A+ ++v+fef+ +va++l+dl+ +++++
Cc11_g08290 130 NQAILEAFANKNRVHVIDFSMKQGMQWPALLQALALRPGGPPSFRLTGIGPPSHDNTDHLQEVGWKLAQLADCIKVEFEFRGFVANSLADLDASMFDI 227
************************************************************************************************** PP
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgre 293
++gE++aVn++++lh+ll++++++e+ vL++vk+l+P++++vveqea+hn++ Fl+rf+e+l+yys+lfdsl + + + ++++++++lgr+
Cc11_g08290 228 REGETVAVNSIFELHQLLSRPGAIEK----VLSAVKELKPEILTVVEQEANHNGPVFLDRFTESLHYYSTLFDSLeGCGSGGGGNGDKVMSEVYLGRQ 321
******************99999999....*********************************************444555555999*********** PP
GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
i+nvvaceg +r+erhetl++Wr r+++aGF++v+l+++a kqa++ll+ ++ +dgyrvee++gsl+lgW++rpL+++SaW+
Cc11_g08290 322 ICNVVACEGVDRVERHETLAQWRTRFGSAGFEAVHLGSNAFKQASMLLALFAgGDGYRVEENNGSLMLGWHTRPLIATSAWK 403
*********************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MKPSSQMGGW GTPSESIITN SRAVASTRPV VLVDSQENGI RLVHALMACA EAIQQENMKL 60
AEALVKHIGF LAVSQAGAMR KVATYFAEAL ARRIYRLYPT SPHDSAFTDL LQMHFYETCP 120
YIKFAHFTAN QAILEAFANK NRVHVIDFSM KQGMQWPALL QALALRPGGP PSFRLTGIGP 180
PSHDNTDHLQ EVGWKLAQLA DCIKVEFEFR GFVANSLADL DASMFDIREG ETVAVNSIFE 240
LHQLLSRPGA IEKVLSAVKE LKPEILTVVE QEANHNGPVF LDRFTESLHY YSTLFDSLEG 300
CGSGGGGNGD KVMSEVYLGR QICNVVACEG VDRVERHETL AQWRTRFGSA GFEAVHLGSN 360
AFKQASMLLA LFAGGDGYRV EENNGSLMLG WHTRPLIATS AWKLS*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
