PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g04980
Common NameGSCOC_T00020426001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 316aa    MW: 36137.4 Da    PI: 7.0695
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g04980genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.61.2e-321972255
      G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 prlrWtp+LH++Fv+a+e+LGG+ekAtPk +l++m+v gLt++hvkSHLQ+YR+
  Cc11_g04980 19 PRLRWTPDLHHCFVHAIERLGGQEKATPKLVLQMMDVRGLTISHVKSHLQMYRS 72
                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.4691575IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-311574IPR009057Homeodomain-like
SuperFamilySSF466893.4E-151775IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-231973IPR006447Myb domain, plants
PfamPF002491.2E-82071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGSCGRNGGV RQYIRSKVPR LRWTPDLHHC FVHAIERLGG QEKATPKLVL QMMDVRGLTI  60
SHVKSHLQMY RSMKNDVARQ DRNITIEPRK QQSVQDLHEG GVEQENNMVY HHPFSDSQFI  120
YNPPPTKRAR IEKMSSISEK LQRCQRIRES VTYDPYGDDD YGQTTAEKSG MIKEKEEGRR  180
DFRWWQQTHE TATPIHIPFS LPQDFFQTLN PSSNAGPMEE SHPFFKVANQ EEVKFEPSKT  240
AKSQNLIEKH YVQEETDDCG LSLSLSLHHP STQISNVSST SEISEAISSY SRNFNDCSGS  300
YLVQHTVNLD LSIAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027099571.10.0myb family transcription factor PHL6-like isoform X2
TrEMBLA0A068UA230.0A0A068UA23_COFCA; Uncharacterized protein
STRINGVIT_01s0137g00050.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54332238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.13e-34G2-like family protein