PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g03780 | ||||||||
Common Name | GSCOC_T00033977001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | HB-other | ||||||||
Protein Properties | Length: 172aa MW: 20361.4 Da PI: 9.7761 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.5 | 5.3e-14 | 49 | 91 | 14 | 56 |
HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +F+ n++p+++er+eL ++lg++ r +k+WFqN+R + k Cc11_g03780 49 LMNMFFKANPHPNQNERKELGNELGVDSREIKFWFQNKRNQVK 91 56677888*******************************8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.0E-6 | 35 | 97 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-12 | 38 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.61E-8 | 40 | 93 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-12 | 41 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-11 | 49 | 91 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.086 | 50 | 93 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MDLKMRFHPT TRRNTRINIA ENHQIWLHGL KSKNIVNYSC IYNRKISDLM NMFFKANPHP 60 NQNERKELGN ELGVDSREIK FWFQNKRNQV KAQIARAENQ TLSEENQRIH SENMMLMERI 120 RYPICLACAT ANGQDDDRKL ILRQLLIENA QLKEEVYFTH SNFVRICVLT L* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027099678.1 | 2e-48 | homeobox-leucine zipper protein ROC8-like | ||||
TrEMBL | A0A068UTH9 | 1e-125 | A0A068UTH9_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13886 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52170.1 | 5e-26 | homeodomain GLABROUS 7 |