PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g03680 | ||||||||
Common Name | GSCOC_T00033959001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | HB-other | ||||||||
Protein Properties | Length: 162aa MW: 19006.6 Da PI: 8.4729 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.9 | 5.6e-16 | 28 | 78 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ + +Lee+F+ n++p+++er+eL ++l+++ +++k+WFqN+R + k Cc11_g03680 28 RNSPDLVAQLEEYFKDNPHPNENERKELGRELRVDPKRIKFWFQNKRNQVK 78 56778899***************************************8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-16 | 11 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.25E-15 | 16 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.981 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-11 | 22 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.04E-12 | 27 | 80 | No hit | No description |
Pfam | PF00046 | 2.0E-13 | 28 | 78 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDPVNGGIGS DDEVSSNNSP KHKNQYHRNS PDLVAQLEEY FKDNPHPNEN ERKELGRELR 60 VDPKRIKFWF QNKRNQVKAQ IARAENHLLR EENQKIYLEN MMMRERMRCT VCSTCAGLAT 120 ATKQDDDRKL ILRQLLVENA QLKEEVYFMH SSFLRIYILS I* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096869.1 | 1e-105 | homeobox-leucine zipper protein ROC8-like | ||||
TrEMBL | A0A068UTG5 | 1e-117 | A0A068UTG5_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13886 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.2 | 2e-33 | HD-ZIP family protein |