PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g15920
Common NameGSCOC_T00033796001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 671aa    MW: 70881.4 Da    PI: 6.5251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g15920genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.6e-08199243144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++WT  Ed+ l  av+++G g+W+ I +      Rt+ q+  rw
      Cc10_g15920 199 RKAWTDVEDQELMAAVRKFGEGNWANILKGDFkSDRTASQLSQRW 243
                      789************************874223566666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.917194251IPR017930Myb domain
SuperFamilySSF466892.97E-11195248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-13195249IPR009057Homeodomain-like
SMARTSM007176.4E-9198249IPR001005SANT/Myb domain
PfamPF002492.3E-6199243IPR001005SANT/Myb domain
CDDcd116603.76E-14200248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MGEKSKKPRK NFVTEEDFST LLQRYTATTV LTLLQEVAQV QDSKIDWNVL VKKSKTGISN  60
PREYQMLWRH LAYRDALLDR LDDAAAQPLD DDSDLECDLE AFPAVSNEAL AEAAACVKVL  120
IASGPSDPNG LTVEAPLTIN IPKGQPSRAP ENSHCNVFAQ GTNITVPVSV QKPSLPSVAS  180
AEALDSNGAA NANLPRRKRK AWTDVEDQEL MAAVRKFGEG NWANILKGDF KSDRTASQLS  240
QRWAIIKKRK GNVTLGTGSQ LSEVQLAARR AVSLALNMPM GDTLKSSPSI SSGTNTNVAH  300
SKLGPPHSNE TPSIVAPLQH DSVSTAGHQI GSSKSRVTTK KPSTKSTISP DSMVKAAAVA  360
AGARIATPSD AATLLKAAQS KNAVHIMPGG SVLKSSMAGN ANSLPSNVHF IRTGLASKPL  420
STYSTAAVSS SQNGGTQQVL GTSSKPAIPL NQPNSAGTAQ ELSAPSEVTS VAVPGPVSRL  480
ESKIVEDFGT FMCNSEKDLL KENQAGFKCD GSNEQMKGDL TAVSVDTKPN QVQEDQGASE  540
NLCSDQAEGG QASVMGEILK EHASGDEVSA SANALNKKAG DLIDSQSSSM AASNGHLSPT  600
DNQASTTFDS ISKDDVMGMP VKCISDKPVK EMFENNMAKR EEGLIMDLDG NDGQANLKQR  660
EAFRMGRSEK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240249QRWAIIKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091503.10.0uncharacterized protein LOC113712333
RefseqXP_027149874.10.0uncharacterized protein LOC113750131
TrEMBLA0A068UV460.0A0A068UV46_COFCA; Uncharacterized protein
STRINGXP_009795383.11e-157(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.15e-60MYB_related family protein