PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g14200

Common Name

GSCOC_T00012009001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 285aa MW: 31904.2 Da PI: 4.5176

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g14200	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.9	9.6e-38	20	79	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+a +cprC s+ntkfCyynnys+sqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++s+ Cc10_g14200 20 ESAPNCPRCASSNTKFCYYNNYSMSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRSK 79 56779***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-29	7	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.0E-32	22	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.472	23	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MFDCPSRPPV MGRRWKSSTE SAPNCPRCAS SNTKFCYYNN YSMSQPRYFC KGCRRYWTKG 60 GSLRNVPVGG GCRKTRRSKS ARQADRLGLI YQMPSPGRAS DESNNSSNGA DIDLAAVFAK 120 FLNQDDSSND LDKIHVSTDQ ESSLSGLSRT SLDLPLGYLD RENQIEDMIF QCQKPTDFID 180 GDQMHEGHPS LSMDVDNIEE LLDQNCNAFE LQAILGEEIG ENASLSDGRS LPNFEWQSTL 240 QFQDFGSFST DDAMKIPSNL ADDNWNTFDV SAGYEFFSRP WNCI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092904.1	0.0	dof zinc finger protein DOF3.5-like
TrEMBL	A0A068VC27	0.0	A0A068VC27_COFCA; Uncharacterized protein
STRING	POPTR_0005s21130.1	2e-76	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	3e-42	Dof family protein