PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g10310

Common Name

GSCOC_T00031429001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 314aa MW: 34293.8 Da PI: 8.7561

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g10310	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G g+W++ ++ g+ R++k+c++rw +yl Cc10_g10310 14 KGAWTKEEDQRLINYIRVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	60.1	4.8e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEde++++++++lG++ W++Ia +++ gRt++++k++w+++ Cc10_g10310 67 RGNFTEEEDEIIIKLHNLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.054	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.99E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.23E-11	16	61	No hit	No description
PROSITE profile	PS51294	28.909	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-28	65	117	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.20E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0090378	Biological Process	seed trichome elongation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR VHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDEIIIK LHNLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLISRG 120 IDPQTHRPLN GGTATTTTTV TPTTTNTDAS KTAKNICLDF RSSALPLDNK NGFMNDHGSS 180 KFKLTTDHSS AEDTKCSSGT TEESQAPQGP LLLEDQATTP SVMLDLELSI GLPQPKSSIS 240 SFSSSAESKV SQGFWAAAAP PQQLTQGAAA AAATATGKPV CLCWQLGYKS GQLCRNCDMA 300 LQISLKIEDR FQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-30	14	116	7	108	B-MYB
1h8a_C	9e-30	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ778723	0.0	DQ778723.1 Coffea canephora microsatellite ES11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027149379.1	0.0	myb-related protein 330-like
Swissprot	P81395	1e-104	MYB30_ANTMA; Myb-related protein 330
TrEMBL	A0A068UQX2	0.0	A0A068UQX2_COFCA; Uncharacterized protein
STRING	XP_009600359.1	1e-117	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	3e-89	myb domain protein 6

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]