PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g10050
Common NameGSCOC_T00031463001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 266aa    MW: 29449.4 Da    PI: 7.2167
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g10050genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.43.8e-341771155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Cc10_g10050 17 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 71
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3371474IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-321672IPR009057Homeodomain-like
SuperFamilySSF466892.87E-181671IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-261772IPR006447Myb domain, plants
PfamPF002491.0E-91970IPR001005SANT/Myb domain
PfamPF143792.0E-23103149IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDFMNGGNNN AANLASKQRL RWTNELHERF VDAVAQLGGP DRATPKGVLR VMGVQGLTIY  60
HVKSHLQKYR LAKYLPDSSV DGKKLDKKDA KDMLAGLDGS SGMEITEALK LQMEVQKRLH  120
EQLEVQKQLQ LRIEAQGKYL KKIIEEQQRL NGVLPEGPSA GVTDNCADVE MRTDPGTPPP  180
TSEPPVIDKP TKDHPSTKSL SMDESFSPQE PQTPESGCHM NLFENIDADR SSKKQRVGLN  240
AAFSKPDMMF TQQLSGLHSV FPTRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-241774259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-241774259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-241774158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-241774158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-241774158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-241774158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-241774259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-241774259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-241774259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-241774259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-241774259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-241774259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094681.10.0myb family transcription factor PHL7-like
SwissprotQ9SJW01e-112PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A068UQ830.0A0A068UQ83_COFCA; Uncharacterized protein
STRINGXP_006449962.11e-127(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-91G2-like family protein