PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g07580 | ||||||||
Common Name | GSCOC_T00034503001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bZIP | ||||||||
Protein Properties | Length: 160aa MW: 18268.7 Da PI: 8.9011 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40 | 8.6e-13 | 70 | 126 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++ rr+++NR +ArrsR+RKk+++eeL++ + +L+ eN++Lk++l + ++ ++++ Cc10_g07580 70 RKRRRMISNRDSARRSRLRKKKQLEELTNQMNQLKLENTELKNQLCLVSHQYRAVQM 126 6789**************************************999888888776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.3E-13 | 66 | 130 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-10 | 67 | 121 | No hit | No description |
PROSITE profile | PS50217 | 11.128 | 68 | 131 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.3E-10 | 70 | 120 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.13E-11 | 70 | 121 | No hit | No description |
CDD | cd14702 | 4.31E-18 | 71 | 122 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 73 | 88 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MSCEEPVHFH FPPVLEDPFT CSDLHDLVSL IQSGFPTHAN SGSETTRNGM PSNSTSGSET 60 NRSVYSVEER KRRRMISNRD SARRSRLRKK KQLEELTNQM NQLKLENTEL KNQLCLVSHQ 120 YRAVQMDSTR LMAESIDLRQ KLANLNQILV NMQLPSSLH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 73 | RKRRR |
2 | 71 | 90 | RRRMISNRDSARRSRLRKKK |
3 | 82 | 88 | RRSRLRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028065855.1 | 6e-41 | basic leucine zipper 4-like | ||||
TrEMBL | A0A068U073 | 1e-113 | A0A068U073_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400012575 | 8e-38 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2820 | 22 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 8e-22 | basic leucine-zipper 5 |