PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g06050

Common Name

GSCOC_T00034718001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 363aa MW: 40571.1 Da PI: 6.6335

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g06050	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.1	1.4e-11	77	107	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 ++k+ rr+++NReAAr+sR+RKka++++Le+ Cc10_g06050 77 SDKVLRRLAQNREAARKSRLRKKAYVQQLET 107 5899*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0026	75	128	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.2E-9	78	108	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.75E-7	79	111	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.7E-7	81	119	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.5E-27	165	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MMNMASSTQF APSRRMGIYD AVQQMSMWED TFRAHMTPDT GVSIFTKADP SLSSKSECTS 60 KEPLIPPIES QATRSISDKV LRRLAQNREA ARKSRLRKKA YVQQLETSRL KLAQLELEID 120 RARQQGACIG GAVANVGFTG SINPGIAAFE MEYGHWVDEQ QKKTSELRNL LQSPISDLEL 180 EMVVDNLLNH YHDLFRMKAD AAKADVFYLV SGVWRTSVER FFQWIGGFRP SELVNILMPA 240 LEPLTDQQLV DVCNLRHSCQ QAEDALSQGI DKLQQNLAQS IAADPMVVGN YGSQMASSIE 300 DLEALETFVN QADHLRQQTL QRMSSLLTTR QAARGLLAFG EYFQRLRALS SLWAARPHDA 360 AA*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MMNMASSTQF APSRRMGIYD AVQQMSMWED TFRAHMTPDT GVSIFTKADP SLSSKSECTS  60
KEPLIPPIES QATRSISDKV LRRLAQNREA ARKSRLRKKA YVQQLETSRL KLAQLELEID  120
RARQQGACIG GAVANVGFTG SINPGIAAFE MEYGHWVDEQ QKKTSELRNL LQSPISDLEL  180
EMVVDNLLNH YHDLFRMKAD AAKADVFYLV SGVWRTSVER FFQWIGGFRP SELVNILMPA  240
LEPLTDQQLV DVCNLRHSCQ QAEDALSQGI DKLQQNLAQS IAADPMVVGN YGSQMASSIE  300
DLEALETFVN QADHLRQQTL QRMSSLLTTR QAARGLLAFG EYFQRLRALS SLWAARPHDA  360
AA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027090078.1	0.0	transcription factor TGA7-like
Refseq	XP_027090079.1	0.0	transcription factor TGA7-like
Swissprot	Q93ZE2	1e-151	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A068TY62	0.0	A0A068TY62_COFCA; Uncharacterized protein
STRING	XP_009776929.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-153	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]