PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g04280
Common NameGSCOC_T00034954001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 236aa    MW: 27100.2 Da    PI: 10.4702
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g04280genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.3e-18131220299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +k +++s+v+   +l lp +f ++h  +k ++ t+tl de+g +W+  +  rk++    l++GWk+F  +++L +gD +vF+l++ + f  +v+++r+
  Cc10_g04280 131 VKPMLQSHVTGGFWLGLPSHFSKRHL-PK-RDDTVTLVDEQGDKWRTIYLARKTG----LSGGWKKFSVDHDLVDGDALVFQLIQPTVF--KVHIIRE 220
                  68999*****************9994.33.5569***************656665....*************************98888..8988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-23123221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-26123222IPR015300DNA-binding pseudobarrel domain
CDDcd100175.42E-27128219No hitNo description
SMARTSM010199.2E-25130221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.902130221IPR003340B3 DNA binding domain
PfamPF023624.7E-16131220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVKSKVKYEQ LRQQRMEENK KKLEKLHLPL LSQALQKAAL SPKTSPMKRV KPRTIRTELV  60
PVRRSGRFTN KPAPQYKEVV FYERVQLPRS TVHPKRDLSN RVYASDEARA WAIEKAEKLE  120
STLESGYPTL VKPMLQSHVT GGFWLGLPSH FSKRHLPKRD DTVTLVDEQG DKWRTIYLAR  180
KTGLSGGWKK FSVDHDLVDG DALVFQLIQP TVFKVHIIRE NGFTEENSHE AICDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091003.11e-174B3 domain-containing protein Os06g0194400-like
SwissprotQ69V366e-75Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A068U1611e-173A0A068U161_COFCA; Uncharacterized protein
STRINGXP_009783454.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-61B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]