PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g04070
Common NameGSCOC_T00034982001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 343aa    MW: 36906.9 Da    PI: 9.8807
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g04070genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.91.4e-15264316557
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                  +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+  e+ ++ +
  Cc10_g04070 264 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELQKKQAEIMEMQK 316
                  79****************************************99999988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-14260325IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.358262313IPR004827Basic-leucine zipper domain
PfamPF001701.9E-13264316IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.09E-11264313No hitNo description
CDDcd147075.60E-27264318No hitNo description
Gene3DG3DSA:1.20.5.1706.7E-15264313No hitNo description
PROSITE patternPS000360267282IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNMDELLKNI WSAEEFQTME FTVGAKDTTG VGITTIPQRQ QTLGEMTLED FLLRAGVVRE  60
DAQLAGKPNI TGLLGDLSRT ANNQASFGFG YQQPERNTGL VSGRVLESGN QMAMESANLP  120
LNVNGVRSTQ QQLGATQTQQ TQLLPQQQHH PLFPKQPGLP YATPIAIPNS AQLGSPGVRG  180
GIVGLSDPAT SASLVQNGAL QGVGVGMVNL GAGAVTIAAG SPAVSSDGLA KSNGDTSSVS  240
PVPYVFNGGL RGRKCSALEK VVERRQRRMI KNRESAARSR ARKQAYTMEL EAEVAKLKEE  300
NQELQKKQAE IMEMQKNQVM EMMNQQRGGK RCCLRRTQTG PW*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091459.10.0bZIP transcription factor 46-like
RefseqXP_027091460.10.0bZIP transcription factor 46-like
SwissprotQ9M7Q42e-90AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLA0A068TZJ90.0A0A068TZJ9_COFCA; Uncharacterized protein
STRINGXP_009795221.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7762497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.11e-67abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]